Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq880 217 3e-54 seq879 168 1e-39 >seq880 Length=74269 Score = 217 bits (240), Expect = 3e-54 Identities = 151/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||| || ||||| |||||||||||| Sbjct 73988 CACGCGGTATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTC 74046 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||| | Sbjct 74047 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAACAGCT 74106 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC 198 || ||||||||||||||| ||||||||||| ||||||||||||||| ||| Sbjct 74107 ACTGATCGTCGCCTTGGTAAGCCATTACCTTACCAACTAGCTAATCAGAC 74156 >seq879 Length=37587 Score = 168 bits (186), Expect = 1e-39 Identities = 138/168 (82%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 42 CTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTG 101 ||||||||||||| |||||||||||||| |||||||||||||||| | |||| | ||||| Sbjct 24452 CTGGATCAGGCTTGCGCCCATTGTCCAAGATTCCCCACTGCTGCCGCTCGTAAGCGTCTG 24511 Query 102 GACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCC 161 | |||||||||||| |||||||| | |||||| |||||| ||| | || | ||| | | Sbjct 24512 GGCCGTGTCTCAGTCCCAGTGTGGCCGATCATTCTCTCAAACCGGCTAGGCATCTCAGGC 24571 Query 162 TTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATC 209 |||||| ||||||||| ||||||| | ||||| | | | ||||||| Sbjct 24572 TTGGTGCGCCATTACCACACCAACAACCTAATACCCCGCAAGCTCATC 24619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071990566400