Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq880 297 7e-78 seq879 136 1e-29 >seq880 Length=74269 Score = 297 bits (328), Expect = 7e-78 Identities = 349/467 (75%), Gaps = 15/467 (3%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||| ||||||||||||| | | |||| || ||| ||||| Sbjct 71622 CGCTGCGCCTCAACGCATTTCGAGGAGAACCAGCTAGCTCCGAGTTCGACTGGTATTTCA 71681 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 || ||| ||||| |||||| || | |||||||| | ||| ||||||| ||| |||| || Sbjct 71682 CCGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTTCACGTGG 71741 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| |||||| |||| ||||| |||||||| | ||||||||| || | Sbjct 71742 TGTTACCCAAGCTTCATCCTGGTCATGGTTAGATCACCCGGGTTCGGGTCTAGAAAAAGT 71801 Query 316 CACTCATA-CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG--TTAACC 372 ||| | |||||||||| |||| ||||||||| |||| | | | |||||| Sbjct 71802 GACTTAACTCGCCCTATTCAGACTTGCTTTCGCTCTGGCTCCAGATTATTGTCTTTAACC 71861 Query 373 TCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACC 432 | || || | | || |||| ||| |||||||||| ||| |||| |||| |||| Sbjct 71862 TTGCCACTCTTT-CTAAGTCGCCGGCCCATTCTTCAACAGGTACGCGGTCA----GTACT 71916 Query 433 TAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC 492 | || | || |||| || | |||| ||| | ||||||| || |||||||||||| Sbjct 71917 TGAA--GTAC-----CTCCCACTGTTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCC 71969 Query 493 CCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGA 552 || ||||||| ||||||||||||||||||||||||| | | |||||||||||| | || Sbjct 71970 CCTACAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCTAAGA 72029 Query 553 GTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||| |||| |||||||| | |||||||||| |||||| Sbjct 72030 GTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 72076 >seq879 Length=37587 Score = 136 bits (150), Expect = 1e-29 Identities = 310/460 (67%), Gaps = 21/460 (5%) Strand=Plus/Minus Query 142 ACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTA 201 |||| ||| |||||| || |||||||||| | | ||| ||||||| |||||||||| Sbjct 16118 ACCTCAATAGATTTCGCAGAAAACCAGCTATTTCCAGGTTCGATTGGCTTTTCACCCCTC 16059 Query 202 TCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCT--- 258 |||| |||||| || || | || | ||| || ||||||| | ||| Sbjct 16058 GTCACATGTCATCTCCGTCTATTGCCACAGACGTGAGTGAGGTCCTCT----GATCTAGG 16003 Query 259 -TACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC---TTGATCGTG 314 || | |||| ||| || ||| ||||||| | | |||||||| | || ||| Sbjct 16002 ATAGTAGATCTTCCACCGGCACATAACGAGATCACCTGGTTTCGGGTCAGATAGAACGTA 15943 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTC 374 | || || | | | |||||| || ||| | || | || || |||| | Sbjct 15942 CATGTC-TATGTTGTGTGACAACTCGCGTTGACTAGGCCTCCACCTACTGGCTTAAGCGT 15884 Query 375 GCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTA 434 || || | |||||| | | |||| | ||||||| ||||||||||| ||| | Sbjct 15883 GC-ACGCTCTATCTACTCGCTGACCCATTATGCAAAAGGTACGCCGTCACCCACTACACA 15825 Query 435 AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCC 494 | | |||| ||| | ||||||||||| |||||||| |||||||||||||| Sbjct 15824 TAGCGGGCTTC------GACTGCTTGTAGGCACACCGTTTCAGGATCTATTTCACTCCCC 15771 Query 495 GCCAGGGGTAC-TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 ||||||| ||||||||||||||||||||||| | | |||||| ||| | | Sbjct 15770 TTTCGGGGTACTTTTTCACCTTTCCCTCACGGTAC-TCTATACTATCGATCATATTGCAA 15712 Query 554 TATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAA 593 |||||||||||| |||||||||| | | |||| ||| || Sbjct 15711 TATTTAGGCTTAGAGGGTGGTCCCCCTATATTCCCACAAA 15672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817584005120