Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq880 226 7e-57 seq879 190 5e-46 >seq880 Length=74269 Score = 226 bits (250), Expect = 7e-57 Identities = 311/417 (75%), Gaps = 16/417 (4%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| ||| || | || ||| Sbjct 71689 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTTCACGTGGT-GTT 71745 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||| ||| || |||| ||| || |||||| ||||| || |||||||| || Sbjct 71746 ACCCAAGCTT-CATCCTGGTCAT-GGTTAGATCACCCGGGTT-CGGGTCTAGAAAA-AGT 71801 Query 129 GACTAGAC--GCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC--TATTCGGTTAAGC 184 |||| || |||||| | ||||| ||||| |||| | |||| |||| || | | Sbjct 71802 GACTTAACTCGCCCTATTCAGACTTGCTTT-CGCTCTGGCTCCAGATTATTGTCTTTAAC 71860 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 |||||||| |||||||| | |||||| | ||| |||||||| |||| || Sbjct 71861 CTTGCCACTCTTTCTAAGTCGCCGGCCCATTCTTCAACAGGTACGCGGTCAGTACTTGAA 71920 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 || ||||||||| |||| ||||| ||||||| | |||||||||||||||| | ||| Sbjct 71921 GTAC-CTCCCACTGTTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCCCCTA-CAGGG 71978 Query 305 GTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGC 364 ||||||||| ||||||||||||||||||| |||||||||||||| | |||||||||| Sbjct 71979 GTTCTTTTCACCTTTCCCTCACGGTACTACTTCACTATCGGTCACCTAAGAGTATTTAGC 72038 Query 365 CTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||| |||| |||||| | | ||||| || |||| |||| || | ||||||| Sbjct 72039 CTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCACGTGTCCCATGCTACTCG 72094 >seq879 Length=37587 Score = 190 bits (210), Expect = 5e-46 Identities = 164/199 (82%), Gaps = 7/199 (4%) Strand=Plus/Minus Query 203 TCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA----ACAAAGTGGGCTCCCACTG 258 ||||||||||||||| |||||||||||| |||||||| ||| || ||||| | |||| Sbjct 15868 TCGCTGACCCATTATGCAAAAGGTACGCCGTCACCCACTACACATAGCGGGCTTCGACTG 15809 Query 259 CTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTT-CGCCT 317 |||||| ||| || ||||||||||||||||||||||||| || ||||| ||||| | ||| Sbjct 15808 CTTGTAGGCACACCGTTTCAGGATCTATTTCACTCCCCTTTC-GGGGTACTTTTTCACCT 15750 Query 318 TTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGGT 377 ||||||||||||||| | ||||||| ||| | | ||||||| ||| |||| |||| Sbjct 15749 TTCCCTCACGGTACT-CTATACTATCGATCATATTGCAATATTTAGGCTTAGAGGGTGGT 15691 Query 378 CCCCCCATATTCAGACAAA 396 ||||| |||||| ||||| Sbjct 15690 CCCCCTATATTCCCACAAA 15672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241589073920