Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq880 192 1e-46 seq879 105 2e-20 >seq880 Length=74269 Score = 192 bits (212), Expect = 1e-46 Identities = 290/405 (72%), Gaps = 12/405 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||| |||| ||||||||||||| || ||||||||| ||| ||| | Sbjct 71087 CGACTACGCTTGTCAGCCTCGCCTTAGGTCCTGACTCACCCTCCATGGACGAACCTAGTG 71146 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCAC-ACGCTACTCATGCCT 119 |||| |||| | | |||| | | |||||| |||| | ||| |||||| ||| Sbjct 71147 GAGGAATCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTACGTTACTCAAGCCG 71206 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGA-CA 176 |||||||||| || || ||||| | | | || |||||||| || || Sbjct 71207 ACATTCTCACTTCTGCTTCG--TCCACAATT-ACTTACATAATTGCTTCACCCTAGAGCA 71263 Query 177 CGACGCTCCCCTACCCAACCACAC---AGGTTGCCACAGCTTCGGCGGATAACTTAAGCC 233 ||||||| ||||| | | | | ||||||||||||| ||| | ||| || Sbjct 71264 GAACGCTCCTCTACCGATATTTTCTTAAATATCCCACAGCTTCGGCAGATCATTTAGTCC 71323 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 | | ||||| |||| || | | ||| ||||||||||||||||||||||||| ||||| Sbjct 71324 CGG--ACATTTTCGGTGCAAGAACGCTTAACCAGTGAGCTATTACGCACTCTTTAAAGGA 71381 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| |||| ||||| |||| ||||| ||| ||| |||||| ||||| | Sbjct 71382 TGGCTGCTTCTAAGCAAACCTTCTGGCTGTCTCAGCATTCTCACCTCCTTTGCCACTTAA 71441 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 | || ||||||||||||||| ||||||||||||||||||||| Sbjct 71442 CGATCATTTAGGGGCCTTAGCTAGTGATCTGGGCTGTTTCCCTCT 71486 >seq879 Length=37587 Score = 105 bits (116), Expect = 2e-20 Identities = 143/198 (72%), Gaps = 5/198 (3%) Strand=Plus/Minus Query 206 GCCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCAC---TTG 262 ||| | || |||| ||| ||| ||| ||| ||||| | ||||| |||| | | Sbjct 16451 GCCGCCGCGTCGGTACATATCTTGAGCTCCGTGACATTGTTGGCGCTT--TCACGCATCG 16394 Query 263 ACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTG 322 |||||||||||||||||| || | | | |||||||||||||||| || ||||||||| Sbjct 16393 ACCAGTGAGCTATTACGCTATCATCATAAGGTGGCTGCTTCCAAGCCTACTTCCTGGTTG 16334 Query 323 TCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATC 382 || | || || |||||||||||| || | || || ||||||| | || Sbjct 16333 TCAAAGCGTGAAAACTTCCTTTCCCACTCAGATATGGTTTGGGAACCTTAGCGTTCGGTC 16274 Query 383 TGGGCTGTTTCCCTCTCG 400 |||||||||||||||||| Sbjct 16273 TGGGCTGTTTCCCTCTCG 16256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177589637120