Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq880 259 8e-67 seq879 159 5e-37 >seq880 Length=74269 Score = 259 bits (286), Expect = 8e-67 Identities = 223/275 (81%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| |||||||||||||||| |||||| |||| |||| ||| ||||| Sbjct 69708 GAGGTGGGCTTCCCACTTAGATGCCTTCAGCGGTTATCCACTCCACACTTGGCTACCCAG 69767 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||| | ||||||| ||||||||| ||| | ||| |||||||||||| Sbjct 69768 CGTTTACCACTGGCGTGATAACTGGTATACCAGAGGTGTGTTCTTCCAGGTCCTCTCGTA 69827 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| ||||||||| ||| |||| || |||||| ||||||||||||||| Sbjct 69828 CTATGGAAGAATCCTCTCAATGCTCCAACGCTTACACCGGATATGGACCGAACTGTCTCA 69887 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 69888 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 69947 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 69948 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 69982 >seq879 Length=37587 Score = 159 bits (176), Expect = 5e-37 Identities = 191/257 (74%), Gaps = 2/257 (1%) Strand=Plus/Minus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || | || |||||| || || ||||||| ||| |||| Sbjct 20710 GCTTGAGATGCTTTCAGCAGTTGTTGCTCCCAAACGTAACTACCCAGCTGTGCCTCTGGC 20651 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 ||||||||| || |||||||||||| |||||||||||||| ||| ||| || Sbjct 20650 GAGACAACTGGTCCATCAGAGGTTTGTCGTGGTCGGTCCTCTCGTAC-AAGAACACGCCC 20592 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACC 194 || | || ||| |||| | |||||| || ||||||| |||||| | |||| Sbjct 20591 TCCGCAGTTGTATACACCCAAAAGAGATAGGATCCATACTGTCTTACGACGTATTAAACC 20532 Query 195 CAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCA 254 || ||| ||| || |||| || ||||||||||| ||||||| | |||| ||||||| | | Sbjct 20531 CAACTCACGTACCGCTTTCATCGGCGAACAGCCGAACCCTTCGAACCTTCTTCAGCTCGA 20472 Query 255 GGATGAGACGAGCCGAC 271 ||||| || ||| |||| Sbjct 20471 GGATGCGATGAGTCGAC 20455 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780793343680