Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq880 356 7e-96 seq879 181 3e-43 >seq880 Length=74269 Score = 356 bits (394), Expect = 7e-96 Identities = 285/341 (84%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||||||||||||||||||||||||||| |||||||||||||||||||||||||| | | Sbjct 74158 GCGTCTGATTAGCTAGTTGGTAAGGTAATGGCTTACCAAGGCGACGATCAGTAGCTGTTC 74099 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 74098 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 74039 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| |||||||| ||||| Sbjct 74038 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATACCGCGTGAAGGATGAC 73979 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAATGACGGTACTTGAGGAGGAA 399 ||||| |||| ||||| ||| | |||| |||| || |||||||| |||||| || Sbjct 73978 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAGAAGAATTTTGACGGTATCTGAGGAATAA 73919 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 73918 GCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG- 73860 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||| | |||||||||| || ||||||||||| | ||||| Sbjct 73859 ATTAATTGGGCGTAAAGCGTCTGTAGGTGGTTTATCAAGTC 73819 >seq879 Length=37587 Score = 181 bits (200), Expect = 3e-43 Identities = 241/327 (74%), Gaps = 7/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| | |||||| ||||| ||| |||||| | ||| |||||| |||||| Sbjct 24603 ATTAGGTTGTTGGTGTGGTAATGGCGCACCAAGCCTGAGATGCCTAGCCGGTTTGAGAGA 24544 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 |||||||||||| ||| |||||||||||| ||| || | |||| | ||||||||||||| Sbjct 24543 ATGATCGGCCACACTGGGACTGAGACACGGCCCAGACGCTTACGAGCGGCAGCAGTGGGG 24484 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC--CT 345 ||| ||| ||||||||| ||||||||| ||| | ||| | | ||||| ||| | Sbjct 24483 AATCTTGGACAATGGGCGCAAGCCTGATCCAGTGATATCGCTTTGGGGATGACGGCGACA 24424 Query 346 TCGGGTCGTAAA-GCTCTGTCCTCAAGGAAGATAATGACGGTACTTGAG-GAGGAAGCCC 403 | || ||||| || || || | ||| | |||| || | || | ||| || Sbjct 24423 T-ACGTTGTAAACCCTATGCACTTTATATAGACATTGACCGT-GTAAAGTGTCCAAGTCC 24366 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||| | |||||||||||||||||||||||| ||||| |||||||| | ||| | Sbjct 24365 CGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTATTCAAAATGA 24306 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | |||||||||| | |||||||||| Sbjct 24305 -TTGGGCGTAAAGCGCACGTAGGTGGT 24280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497586821120