Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq880 289 7e-76 seq879 134 3e-29 >seq880 Length=74269 Score = 289 bits (320), Expect = 7e-76 Identities = 308/405 (76%), Gaps = 1/405 (0%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 73928 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 73869 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||| | | ||||||||||| || ||||||||||| | ||||| || ||| Sbjct 73868 GTTATCCGGATTAATTGGGCGTAAAGCGTCTGTAGGTGGTTTATCAAGTCTTTTGTCAAA 73809 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | ||| ||||| ||| || |||||| || |||| | | ||||||| Sbjct 73808 GATCAGGGCCTAACCCTGGGCAGGCAGAAGAAACTAATAAACTTGAGTTCGGTAGGGGCA 73749 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||||| ||| |||||||||||||||||| || |||||||||||| |||||| Sbjct 73748 GAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAGGCGAA 73689 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| |||||| | ||||||||||||||| |||||||| ||| |||||| ||||| Sbjct 73688 GGCACTCTGCTGGGCCGTAACTGACACTGAGAGACGAAAGCGAGGGTAGCAAATGGGATT 73629 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGG-GGCGCATAAGTG 363 |||||||| ||||||| |||||||||||||| ||||||||||| || | | || | Sbjct 73628 AGATACCCCAGTAGTCCTCGCCGTAAACGATGGATACTAGGTGTTGGATGGGTTCAAATC 73569 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || ||| ||| ||||| |||||| || ||||||||||| Sbjct 73568 ATTCAGTACCGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 73524 >seq879 Length=37587 Score = 134 bits (148), Expect = 3e-29 Identities = 240/338 (71%), Gaps = 27/338 (8%) Strand=Plus/Minus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||| ||||||||| | |||||||||||||||||||||||| ||||| |||||||| | Sbjct 24371 AAGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTATTCA 24312 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 ||| | ||||||||||| | |||||||||| | || ||| | | ||| Sbjct 24311 AAATGATTGGGCGTAAAGCGCACGTAGGTGGTGATATG-GT-----GTGGTATG-TAT-- 24261 Query 133 CTCAACCCC--GGGACTG-CTTTTGAAACTGCAGGGCTAG-AGTGCAGGAGGGGCAAG-- 186 |||| || || || | | || || | || | | |||| | | ||| Sbjct 24260 -TCAAACCATAGGTTTTGTCGATAGATACAGACATCATATCACTTGAGGACGTGAAAGGA 24202 Query 187 ---TGGAATT-CCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCG 242 ||||||| || || | |||||| |||| || ||| | | |||||||||| ||| Sbjct 24201 GCATGGAATTTCCCAG-GAAGCGGTAGAATGTGTTGATCTGGGAAGGAACACCAAACGCG 24143 Query 243 AAGGCGGCTTGCT---GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||| | |||| | || ||| |||||| ||||| ||||||||||||||||||| Sbjct 24142 AAGGCAG--TGCTCTTGCAC-GTACCTGACATTGAGGTGCGAAAGCGTGGGGAGCAAAAG 24086 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||||| ||||||||||| || |||||||| Sbjct 24085 GGATTAGATACCCCTGTAGTCCACGCTGTCAACGATGA 24048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203189411840