Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq880 221 4e-55 seq879 91.5 5e-16 >seq880 Length=74269 Score = 221 bits (244), Expect = 4e-55 Identities = 396/568 (70%), Gaps = 23/568 (4%) Strand=Plus/Minus Query 4 AGTCCGAACAGGGCGAC---AGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCAT 60 |||| ||| ||||||| |||| || | |||||||||| || |||||||| |||| Sbjct 71825 AGTCTGAATAGGGCGAGTTAAGTCACTTTTTCTAGACCCGAACCCGGGTGATCTAACCAT 71766 Query 61 GGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAAT 120 | ||||||||||| | |||||||| | || ||||||||||| ||| |||||||||||| Sbjct 71765 GACCAGGATGAAGCTTGGGTAACACCACGTGAAGGTCCGAACCGACTGATGTTGAAAAAT 71706 Query 121 TAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTC 180 || ||||||| ||||| ||| ||||||| | | | |||| ||| |||||||||||| Sbjct 71705 CAGCGGATGAGTTGTGGTTAGCGGTGAAATACCAGTCGAACTCGGAGCTAGCTGGTTCTC 71646 Query 181 TCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACCATC-GGGGGTAGAGCACTGTTATG 239 ||||| || ||| || || | | ||| |||||| ||||||||| | Sbjct 71645 CTCGAAATGCGTTGAGGCGCAGCGGTCAGCAAGGCTATCTAGGGGTAAAGCACTGTTTCG 71586 Query 240 GCTAGGGGGTCATTGCGA---CT-TACCAAACCATTGCAAACTCCGAATGC--GCATCAG 293 | ||| | |||| || ||||||| | | |||||||| |||| | | | Sbjct 71585 GTGCGGGCG-----GCGAAAGCTGTACCAAATCGTGGCAAACTCTGAATACTAGATACGC 71531 Query 294 TTTTACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCG 353 | || | | |||||| |||| | |||| | | | | ||||| || | || Sbjct 71530 TATTTTCTGGCCAGTGAGACAGTGGGGGATAAGCTTCATTGTCAAGAGGGAAACAGCCCA 71471 Query 354 GACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAA 413 || | |||||||||||| |||||| | ||||| | || || || || |||| | Sbjct 71470 GATCACTAGCTAAGGCCCCTAAATGATCGTTAAGT--GGCAAAGGAGGTGAGAATGCTGA 71413 Query 414 GACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACT 473 |||||| || | ||| |||| |||||||||| || |||||||||||||||| |||||||| Sbjct 71412 GACAGCCAGAAGGTTTGCTTAGAAGCAGCCA-TCCTTTAAAGAGTGCGTAATAGCTCACT 71354 Query 474 AGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGA 533 || || || || || ||| || || | ||| | ||| ||||||| |||||| Sbjct 71353 GGTTAAGCGTTCTTGCACCGAAAAT-GTCCGGGACTAAATGATCTGCCGAAGCTGTGGGA 71295 Query 534 TCATTT---ATATGATCGGTAGGGGAGC 558 | |||| | | |||||||| ||||| Sbjct 71294 T-ATTTAAGAAAATATCGGTAGAGGAGC 71268 >seq879 Length=37587 Score = 91.5 bits (100), Expect = 5e-16 Identities = 245/363 (67%), Gaps = 15/363 (4%) Strand=Plus/Plus Query 123 GGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTC 182 || ||||| |||| |||||||||| || || | ||| ||||||||||||||| ||| Sbjct 16043 GGAGATGACATGTGACGAGGGGTGAAAAGCCAATCGAACCTGGAAATAGCTGGTTTTCTG 16102 Query 183 CGAAAACTATTTAGGTAGTGCCTCAAGTATCA-CCATCGGGGGTAGAGCACTGTT--ATG 239 ||||| ||||| |||||| ||| ||| | || |||||||||||||| || || Sbjct 16103 CGAAATCTATTGAGGTAGAGCCCATTGTACGATGTATGGGGGGTAGAGCACTTTTTGGTG 16162 Query 240 GCTAGGGGGTCATTGC--GACTTACCAAACCATTGCAAACTCCGAATGCGCATCAGTTTT 297 | | || || || |||| | ||| | ||||||| ||| | ||| | | Sbjct 16163 ACAGGTGGCCCAAAGCTTGACTGTC---TCCA-GGAAAACTCCAAATACCCAT-ACCATC 16217 Query 298 ACCGCGGGAGTGAGGGCATGGGTGCTAAGGTCC-GTGCCCGAGAGGAGAAGAATCCGGAC 356 | | |||| || |||||| ||||||| ||| ||||||| || | || ||| Sbjct 16218 ATCAATGGAGACAGACACAGGGTGCAAAGGTCCTGTG-TCGAGAGGGAAACAGCCCAGAC 16276 Query 357 TATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGAC 416 ||||||| || ||| | | || ||| | || ||||| | ||| ||| Sbjct 16277 CGAACGCTAAGGTTCCCAAACCATATCTGAGTGGGA--AAGGAAGTTTTCACGCTTTGAC 16334 Query 417 AGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGT 476 | | |||| || |||||||||||||||| | | | | || |||||| |||||||| || Sbjct 16335 AACCAGGAAGTAGGCTTGGAAGCAGCCA-CCTTATGATGATAGCGTAATAGCTCACTGGT 16393 Query 477 CGA 479 ||| Sbjct 16394 CGA 16396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689585131520