Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq880 232 2e-58 seq879 95.1 4e-17 >seq880 Length=74269 Score = 232 bits (256), Expect = 2e-58 Identities = 351/489 (72%), Gaps = 19/489 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 70117 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACGGCTGATTTCC 70176 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||| || |||||||||| Sbjct 70177 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGA-GGTGACCGCCCCAG 70235 Query 121 TTAAACTACCCACCAGGCACTGTC-CCCAACCCAGATCATGG---GCCAAGGTTAGATAT 176 | ||||| |||||| | |||||| | || ||| || |||| ||||| | Sbjct 70236 TCAAACTGCCCACCTGAAACTGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATT 70292 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCA 233 | | ||||||||| | ||| | | ||||| || ||| || | | Sbjct 70293 CTAGCTTTTCCAGAGTGGTCTCTCACTGATGGCTCCAAAATACCCAGAAGTAT---TTCT 70349 Query 234 TCATAGTCTCCCACCTATCCT--ACACAAACCGCACCGAATGCCAATACCAAGCTATAGT 291 |||||| |||||||||| || || ||| || ||||| ||||| |||||||| ||| Sbjct 70350 TCATAGCCTCCCACCTAGTCTGCGCAAAAAAAGC-CCGAA-CCCAATTCCAAGCTACAGT 70407 Query 292 GAAG-GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCA 350 ||| || |||||||| |||| || | | ||||||| || | | Sbjct 70408 CAAGCTTCATAGGGTCTTTCTGTCCAAGTGCAAGTAGTCCGCATCTTCACAGACATGTCT 70467 Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGG 410 ||||||||| | || | ||||||| |||||||||| ||||||| |||||| Sbjct 70468 ATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTTACGCCTTTCGTGCGGGTCGG 70527 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || Sbjct 70528 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 70587 Query 471 TGGGGCTTC 479 |||||||| Sbjct 70588 CGGGGCTTC 70596 >seq879 Length=37587 Score = 95.1 bits (104), Expect = 4e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | | | | | |||||||| ||| |||||| || |||||| |||| ||| Sbjct 17905 CAATTTCACTGAGTGTATATTGGAGACAGCGGGGCAGTCGTGACACCATTCATGCACGTC 17846 Query 409 GGAACTTACCCGACAAGGAATTTCGCT 435 ||||||||||||||||||||||||||| Sbjct 17845 GGAACTTACCCGACAAGGAATTTCGCT 17819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702385018880