Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq232 224 8e-54 seq457 159 3e-34 >seq232 Length=44964 Score = 224 bits (248), Expect = 8e-54 Identities = 608/915 (66%), Gaps = 18/915 (2%) Strand=Plus/Plus Query 61024 AATGAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAG 61083 ||||||||| || || | ||||| | ||| ||||| |||||||| ||| ||||| | Sbjct 11149 AATGAACCCTTACTGGACGAGAACAGTGATCGATTCGTCTTGTTCCCGATCAAGTATAAT 11208 Query 61084 GATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGAT 61143 || || ||| |||||||| ||||| || |||||||||||||| | || ||||| ||| Sbjct 11209 GAAATCTGGGAAATGTACAAGAAGGCAGAGGCTTCCTTCTGGACAGCTGAAGAGGTTGAT 11268 Query 61144 TTGTCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAA 61202 || |||||| || |||||| || || | || | || ||||||||| Sbjct 11269 CTGGGAGGAGACATCAAGCACTGGGAAGGATTGAATGA-CAACGAGAGACATTTCATCTC 11327 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | || |||||||| || || || || ||||| ||||||||||| || ||| Sbjct 11328 TCATGTGCTTGCATTCTTTGCTGCATCTGATGGCATCGTAAATGAGAATTTGGGGGTACG 11387 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 || | |||||||||| | | ||||| | ||| || || ||||| || ||||| Sbjct 11388 ATTTTTGAAGGAGGTGCAGATCCCAGAGGCCAGAGCTTTTTATGGATTCCAAATCGCCAT 11447 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| | || |||||||| ||| | || | || || ||||||| ||| | | Sbjct 11448 TGAGAATATTCATAGCGAGATGTATAGTCTCCTGCTTGAGACATACATCAAGGATCCTGT 11507 Query 61383 GGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 ||| |||| | ||||| ||||||||||||| |||| | ||||||| ||| || | Sbjct 11508 TGAA-AAGAACAAGCTGTTCCATGCCATCGAGACAGTACCAGTGGTGAAGAAGAAGGCAG 11566 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 |||||||| | | ||||| ||| || | | | | || | || |||||| | |||| Sbjct 11567 ATTGGGCCATGAGATGGAT--TGAGTCCAGC-GATTCTTTCGCAGAGCGATTGGTTGCAT 11623 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || || || || | || ||| ||||| || || || | ||| | || | Sbjct 11624 TCGCCTGCGTTGAAGGAATTTTCTTCTCCGGATCCTTCTGTGCCATTTACTGGCTCAAAA 11683 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || | || || |||| ||| ||| |||||||| || || || ||||| Sbjct 11684 AGCGAGGGCTGCTTCCAGGATTGACATTCTCCAACGAGTTGATCTCTCGTGATGAGGGGC 11743 Query 61622 TGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGG--A 61679 | || |||||||| | || || | || || || | || | | Sbjct 11744 TCCACACAGATTTTGC---ATGCCTCATCTACTCCTTGCTCAACAACAAGC--TCAGCAA 11798 Query 61680 GGAGCGTGTGGGTGAGATTGT-TCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTG 61738 |||| | | | || || || || | || | | | | || |||| ||| | | Sbjct 11799 GGAGAGAATCGCAGATATCGTGACGAACGCCGTTGAAT-TAGAGAAGGAGTTTATTTGCG 11857 Query 61739 ACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAAT 61798 |||| |||| ||| || ||||||||||| | || ||||| ||||| ||||||| Sbjct 11858 ACGCCCTGCCTGTCGACCTGATCGGCATGAACGCGAGGCTCATGTCACAGTACATTGAAT 11917 Query 61799 TTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAAC 61857 |||| || || | || |||| | | ||| |||| || | || ||| || Sbjct 11918 TTGTAGCTGATAGACTTCTGGTTGCCCTGGGGAATGACAAGG-TGTACAATGTTGCCAAT 11976 Query 61858 CCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGT 61917 ||||| |||| ||||| ||||||| || | || ||||| ||||| |||||||| | Sbjct 11977 CCATTCGATTGGATGGAACTGATTTCTTTGCAGGGAAAGACAAATTTCTTCGAGAAGAGA 12036 Query 61918 GTAGGCGACTATCAA 61932 || ||||| || ||| Sbjct 12037 GTTGGCGAGTACCAA 12051 >seq457 Length=513114 Score = 159 bits (176), Expect = 3e-34 Identities = 601/935 (64%), Gaps = 6/935 (1%) Strand=Plus/Plus Query 66008 GCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCG 66067 |||| ||||| |||||||| || || | || || || || ||||| | ||||| Sbjct 208491 GCAATGGATGCAAGGTTGCACACTGCAGTTTCATCCGGGCTTGTGTACTCAATGATTTCA 208550 Query 66068 GTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCAT 66127 ||||||| |||||| | || |||||||| |||||||||||| ||| | ||| Sbjct 208551 GTGCACAAGTTACTGGATTTAATTGTGCCCAAGTTCTGTTGATTAGACTTTCTGTTGGCA 208610 Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 | ||||||| | | |||||| ||| | || ||||||||||| | || | |||||| | Sbjct 208611 GAATCCTTGAAGAGCATGTAAGGATTTCCCGTCTCAACTTGAGCTTCGAGGATGGCAAAC 208670 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTAC-CGCCCTACCTTTGCGTTCGTAATGTTCGTA 66246 ||||| | ||||| | | || ||| || | || | |||||| || | || Sbjct 208671 CAAAGCTGTTGGGCCTTGA-TGGACTTACGAGCACGTCCCTCGCGTTCATATTTCAAATA 208729 Query 66247 GAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACAT 66306 | | ||| || ||| ||||| |||| |||| || | | |||||| | Sbjct 208730 TAATTCTTCAAATTGTTCTCCCCAGCAGTCGGCAAGACCAGGGGCTTCATTTGGACAAAA 208789 Query 66307 CAGCGACCAATCACCATCCTG-TTCTACACGACGCATAAATAGATCAGGTATCCAGAGGG 66365 || ||||| || || ||| | ||| || | ||||||| ||||| || ||||| | Sbjct 208790 CAAGGACCACTCTCC-TCCAGCTTCAACCCTTTGCATAAAGAGATCTGGGATCCACAACC 208848 Query 66366 CGTAGAAGAGATCGCGTGCTCGTTGC-TCCTCAATGCCGTGATTTTTGCGCAAGTCGAGG 66424 ||||||| | ||| | ||| | | || || || |||||||||| || | ||| || || Sbjct 208849 CGTAGAACAAATCTCTTGC-CCTCGCTTCTTCTTTGCCGTGATTCTTCCTCAATTCAAGC 208907 Query 66425 AACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTG 66484 | || || || || || ||||| || |||| ||| ||||| |||| || | | || Sbjct 208908 CAGTCGAAAATATCAGCGTGCCAAGGCTCCAAGTACATGGCAAACGCTCCTTTTCTCTTC 208967 Query 66485 CCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGC 66544 || || || || || || || | || | ||||| ||||| | ||| ||||| | Sbjct 208968 CCCCCTCCCTGATCAACATATCTGGCCGTGTCATTGAACACACGGAGCATAGGTACAATA 209027 Query 66545 CCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACA 66604 || || || | ||||| || || || || || || | |||| || | | Sbjct 209028 CCATTCGAAGTTCCATTTGTTCCACGAATATAAGAACCAGTCGCTCTGATATTATGCATA 209087 Query 66605 TTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAAT 66664 |||||| || || || || |||| |||||| |||||| || || || | Sbjct 209088 GACAGACCGATGCCCCCTGCACTCTTGGAGATGCAAGCACACTCCTTCAGAGTGTCATAA 209147 Query 66665 ATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTG 66724 ||||| ||||| ||| ||| ||| | | |||| ||| ||| || || Sbjct 209148 ATGCCTTCAATACTATCATTCTTCATGCAGATCAAAAAGCACGAAGAAAGCTGAGGGCGT 209207 Query 66725 GGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAA 66784 || || |||| ||| || || || | || ||||| || | |||||| Sbjct 209208 GGAGTACCGGCATTGAACAGAGTTGGAGAGGCATGCGTGAACCATCTCTGAGACAGCAGG 209267 Query 66785 TTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATC 66844 | ||| ||||| ||| | |||||||| || || || || || | || | || ||| Sbjct 209268 TGGTATGTCTCAATGGCTGCATCAATATTCTCCTTGTGGATTCCAACTGAAACTCTCATG 209327 Query 66845 AGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 || | || || |||| || || | ||| | |||| | || || || || ||| Sbjct 209328 AGCATGTGCTGTGGCCTCTCCACGACACGACCATTGACCCTGAGCAAATATGAACGCTCC 209387 Query 66905 AGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 || || |||| |||||| || ||||| |||||| Sbjct 209388 AGAGTTTTGAAACCAAAATAATCGTAATCGAAATC 209422 Score = 98.7 bits (108), Expect = 8e-16 Identities = 541/846 (64%), Gaps = 32/846 (4%) Strand=Plus/Plus Query 61099 TACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGACATG 61158 ||||||| ||| | || | |||||| ||||||||||| |||||||| |||| | | Sbjct 80046 TACAAAATGGCACAGGCCAGTTACTGGACTGTGGAGGAGGTGGATTTGTCACAAGATAAG 80105 Query 61159 AATGACTGGGAGCGTTT--ATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCGT 61216 || ||||| ||||| || |||| ||| || || |||| |||||||||| | Sbjct 80106 CGGGATTGGGATCGTTTGAATGATGCGGAGAAGCACTTT--ATTAGTTATGTGTTGGCAT 80163 Query 61217 TCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAGG 61276 | ||||| || ||||| ||||| || |||||| | || | || ||| ||| Sbjct 80164 TTTTTGCGGCATCGGATGGTATTGTGTTGGAGAATCTGGCGGTGAGGTTTATGCAAGAGA 80223 Query 61277 TGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACT 61336 | || | | || || || || || || || ||| || || |||||||| ||| Sbjct 80224 TTCAGATTCCTGAAGCACGGGCCTTTTATGGGTTTCAGTCGGCGATAGAGAATGTGCACA 80283 Query 61337 CGGAGATGTACAG--TGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAACG 61394 || ||||| | |||| | | || ||| || || | | || || | Sbjct 80284 GTGAAATGTATGGGTTGTTGT--TGGAGCAGTATATTGATGATAAAAAGCAGCGGGATCA 80341 Query 61395 ATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAA 61454 ||||| | || | |||||| | || ||| | ||| || | ||||| |||| Sbjct 80342 TTTGTTTAGGGCTGTGGAGACGGTGCCTTGTGTGCGGAAGAAGGCTGCGTGGGCGATCAA 80401 Query 61455 TTGGATCACCAGTA--CAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 ||||| |||| ||| | | |||| |||||| ||| |||| ||||| || Sbjct 80402 ATGGATT--CAGTCATCAATGTGT---TTTGCTGAACGGTTGGTGGCGTTTGCATGTGTG 80456 Query 61513 GAGGGTGT--ATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 || || | | ||||| | | || || | || | |||||||||||| | Sbjct 80457 GAAGGGATTCACTTTTCGGGG--TCTTTCTGTTCTATTTATTGGTTGAAGAAGAGATTGT 80514 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTG 61630 | ||||| || |||| || |||||| | || || | || |||||| ||||| || Sbjct 80515 TGATGCCAGGGTTGACGTTTTCGAATGAGCTCATCTCTAGAGATGAGGGCTTGCATACTG 80574 Query 61631 ATTTTGC-TGTT--TTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 |||| || ||| ||| |||||| ||| |||| | | | | || ||||| | Sbjct 80575 ATTTCGCATGTCACTTG-TATTCAT----TAT-TGGTTCACCCGCTTCCTGAAGAGCGAG 80628 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || | |||||| ||| || || | | || || ||| ||| || ||| Sbjct 80629 TGAGGATGATTGTGGATGAAGCTGTTGCGTTGGAGAGAGAGTTTTGTTGTGAGGCGTTGA 80688 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGA-CTAATGTCGCAGTATATTGAATTTGTTGCC 61806 || || | | || || ||| | | | || ||| | |||||||||| ||||| || Sbjct 80689 GTGTATCGTTGGTTGGTATTAAT-GCGCAGCTTATGGCAGAGTATATTGAGTTTGTGGCT 80747 Query 61807 GACCGTCTGTTGGTCGATTTGGG-TATGAAGCGGATCTATAATACGAAAAACCCATTTGA 61865 || | |||||||| | ||||| | ||| | ||| || |||| || || ||||| Sbjct 80748 GATAGGCTGTTGGTTGCGTTGGGGTGTGA-GAAGATGTACCATACTCCGAATCCGTTTGA 80806 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| ||||||||| || | || ||||| ||||||||||| |||||| || || Sbjct 80807 TTGGATGGATATGATTTCGTTGCAAGGGAAGACAAATTTTTTCGAACGACGTGTGGGTGA 80866 Query 61926 CTATCA 61931 ||||| Sbjct 80867 GTATCA 80872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397563736083200