Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq880 731 0.0 seq152 95.1 1e-14 >seq880 Length=74269 Score = 731 bits (810), Expect = 0.0 Identities = 753/985 (76%), Gaps = 0/985 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || |||||||||||| || | ||||| | || |||||||||| || || | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCCC 159922 |||||||| ||||| || | ||||||| |||||| |||| || ||||||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 159923 CCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAAC 159982 || || || |||||||| |||||||| || || |||||||| | | |||||||||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 159983 ATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCATT 160042 |||||||| ||||| |||||||| |||| ||||| |||||| | || ||||| || || Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 160043 TGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGTC 160102 |||||||| || || | || |||||| | || ||||||||||||| |||| | || || Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 160103 TTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGT 160162 | || ||| | | || | | | | || |||||||||||||||||| | |||| |||| Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCTTACATGGGTCGTGAGTGGGAATTATCTTTCCGT 60965 Query 160163 CTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCT 160222 | ||||||||||| |||||| |||||| ||||| || ||||| ||||| ||| | ||| Sbjct 60964 TTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAGCT 60905 Query 160223 GTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 160282 |||||| || | ||||| ||||||| ||||||||||| |||| |||||| | |||||| Sbjct 60904 GTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTATC 60845 Query 160283 TCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCCG 160342 || ||||| || |||| ||||||||||||||||| || ||||| ||| | ||||| || Sbjct 60844 TCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACCCA 60785 Query 160343 TTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGA 160402 ||||| ||| | ||||||||||| ||||| ||||| || | ||||| |||||||| || Sbjct 60784 TTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACGGT 60725 Query 160403 TCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGT 160462 || || || |||||| | || | || || || |||| || || ||| | ||| Sbjct 60724 TCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAGGT 60665 Query 160463 TACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGT 160522 ||||| || |||||||| ||||| |||||||||||||| || || ||||| ||||| ||| Sbjct 60664 TACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTGGT 60605 Query 160523 CGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCT 160582 ||||| ||||||||||| || || ||||||||||| || || | ||||||||| | ||| Sbjct 60604 CGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAGCT 60545 Query 160583 GCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAAT 160642 |||||||| || ||||| || ||||||||||| | ||| |||| || |||||||| || Sbjct 60544 GCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTAAC 60485 Query 160643 CTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACACT 160702 | |||||||||||||||||||| || | | || ||||| | || | |||||| Sbjct 60484 TTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACACT 60425 Query 160703 TGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCT 160762 ||||| || | ||||||| ||| | || || ||||| ||||| || | || ||| Sbjct 60424 TGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATGCT 60365 Query 160763 CACAACTTCCCTCTCGACCTTGCTG 160787 |||||||| || || || | |||| Sbjct 60364 CACAACTTTCCACTTGATTTAGCTG 60340 Score = 462 bits (512), Expect = 2e-125 Identities = 722/1020 (71%), Gaps = 17/1020 (2%) Strand=Plus/Plus Query 161525 TTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTT- 161583 |||| ||||||||| || ||||||||||| ||||| || |||||||| || || || Sbjct 49513 TTGATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGG-TTTATTATTA 49571 Query 161584 TTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGC 161643 || || ||||||| | || | || || ||| | ||||| | || || | ||| Sbjct 49572 TTACCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCA 49631 Query 161644 TGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTTCTTACAGCGGCA 161703 |||||||| ||||| | ||| ||| | | | || ||| ||||| | ||||| ||| Sbjct 49632 TGGTATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCA 49691 Query 161704 GTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGC 161762 ||| || || || | |||||||||||| || || || | ||||| || || || Sbjct 49692 GTTTCTACACCTGCAAATAGTATGGGTCATTC-ATTATTATTATTATGGGGCCCAGAAGC 49750 Query 161763 TCAAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCC 161821 ||||| || ||| || | ||| ||| | || || | |||| |||||| || | | Sbjct 49751 ACAAGGCGACTTTACTC-GTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTAC 49809 Query 161822 ACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCG 161881 | || | || ||| | ||||| || ||| | ||||| ||||| |||| ||| || Sbjct 49810 ATGGTTCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGT----TCA 49865 Query 161882 GT----ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGC 161937 || || ||||| || || || || |||||||| | || ||||| ||||| || Sbjct 49866 GTAAAAATTCGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCA 49925 Query 161938 GTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTT 161997 || || | || |||||| | || || || ||||||||| || ||| ||||| ||| Sbjct 49926 GTTTTCTTAATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTT 49985 Query 161998 GCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCG 162057 ||||| || ||| | || | || ||| | ||||||||||| || ||||| | || || Sbjct 49986 GCCGCAATCTTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCA 50045 Query 162058 TTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGT 162117 ||||| ||||||||||| || ||| | || |||| || || || | |||||| || ||| Sbjct 50046 TTCCATATGATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGT 50105 Query 162118 GTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTT 162177 | ||||| |||||||| | | |||||||||| |||||||| ||| || ||| Sbjct 50106 GCAACTGTAGAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTT 50165 Query 162178 GACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAG 162237 || | || |||| || || || || || ||||| |||||||| |||||||||||||| Sbjct 50166 AACCCAACTCAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAA 50225 Query 162238 ATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCC 162297 || || ||| | || ||| ||||| |||||||| |||||||||||| | || || || Sbjct 50226 ATTTTTGGTGTAGCATTTTCAAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCA 50285 Query 162298 GTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTT-CGTGC 162356 || | ||| | |||| ||| | || || | | || | ||| |||| ||| ||||| Sbjct 50286 GTAACTGGTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCT-TTAAACTTACGTGC 50344 Query 162357 TTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTA 162416 || || ||||||||||| || |||||||| ||||| ||||||||||| ||||| ||||| Sbjct 50345 ATATGATTTTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTA 50404 Query 162417 CACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACC 162476 || || ||| | || |||||||| |||| || ||| |||| | ||||| || Sbjct 50405 TACAAAAAATCATTTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCC 50464 Query 162477 GCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGGT 162536 ||||| || || |||||||| ||||| || | || | || ||||| || | |||||| Sbjct 50465 TCATGAAAAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCT-TTAATGGT 50523 >seq152 Length=72664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/170 (73%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 160986 TGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCTACTTGTGC 161045 |||| | ||||| ||||| || ||||| || |||||||| || |||||| | || || Sbjct 24931 TGATCATGCAGGAATTGACCTCCCATACTCTTGCCGTGCTGGAGCCTGCTCTTCCTGCGC 24990 Query 161046 TGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGATGATGATCA 161105 || ||| | || ||| ||||| || || || || || |||||| ||||||| || || Sbjct 24991 AGGAAAGGTCCAGGCTGGAACTGTTGACCAGTCCGACCAGTCTTTCTTGGATGACGACCA 25050 Query 161106 ACTTG--AATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGA 161153 | | ||| |||||||| || ||||||||||| || || || || || Sbjct 25051 GATGGCCAAT--GGATTTGTGCTCACCTGCGTTGCCTACCCAACCTCCGA 25098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551369934864000