Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picochlorum_20sp._20SENEW3_20[genbank_20GCA_5F000876415.1_202014-07- 28] 880 sequences; 13,390,658 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq880 792 0.0 >seq880 Length=74269 Score = 792 bits (878), Expect = 0.0 Identities = 769/987 (78%), Gaps = 4/987 (0%) Strand=Plus/Minus Query 160572 TTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTTCGGTGTGCTG 160631 || || |||||||||||| || | || ||| | ||| |||||||||| ||||| | Sbjct 61324 TTTTGTGAGTGGGTAACTAGCACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTATTA 61265 Query 160632 ATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTTATTACTGCGTTCGTTGCTGCTCCC 160691 |||||||| ||||| || | ||||| || || | || || | |||||||| Sbjct 61264 ATGATCCCTACTCTATTAACTGCAACTACAGTATTCATCATCGCATTTATCGCTGCTCCT 61205 Query 160692 CCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAAC 160751 || || || ||||| ||||||||||| || ||| |||||||| | | || || |||||| Sbjct 61204 CCAGTTGATATCGATGGTATCCGTGAGCCTGTTTCTGGTTCATTATTATACGGTAACAAC 61145 Query 160752 ATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATT 160811 |||||||| ||||| |||||||| |||| ||||| |||||| | || |||||||| || Sbjct 61144 ATCATCTCAGGTGCGGTTGTTCCAACTTCAAACGCGATTGGTTTACATTTCTACCCAATC 61085 Query 160812 TGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTACCAACTGGTCGTA 160871 ||||||||||| ||| | ||||| ||| | ||||| ||||||||||||||| | || ||| Sbjct 61084 TGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTACCAATTAGTTGTA 61025 Query 160872 TTTCACTTCCTGATCGGC--ATCTTCTGCTACATGGGTCGCGAGTGGGAACTTTCCTACC 160929 | ||| ||| | | || || |||| ||||||||||| ||||||||| | || | || Sbjct 61024 TGTCATTTCTTCTTAGGTGTATGTTCT--TACATGGGTCGTGAGTGGGAATTATCTTTCC 60967 Query 160930 GCCTCGGCATGCGCCCCTGGATCTGCGTTGCATATTCTGCACCTGTTGCTGCTGCGAGTG 160989 | | || ||||| || |||||| ||||| || || ||||| |||||||| || | | Sbjct 60966 GTTTAGGTATGCGTCCATGGATCGCTGTTGCTTACTCAGCACCAGTTGCTGCAGCTACAG 60907 Query 160990 CAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTA 161049 | |||||| || | || || ||||||||||||||||||||||||||||||| | |||| Sbjct 60906 CTGTATTCATCATTTACCCAATCGGTCAAGGTTCTTTCTCTGATGGTATGCCATTAGGTA 60847 Query 161050 TCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAACACAACATCCTGATGCACC 161109 |||| ||||| ||||||||||||||||| ||||| || || ||||||||| | ||||||| Sbjct 60846 TCTCAGGTACATTCAACTTCATGCTTGTATTCCAAGCTGAGCACAACATCTTAATGCACC 60787 Query 161110 CCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATG 161169 | ||||| ||||| |||||||||||||| || |||||||| | ||||| || ||||| | Sbjct 60786 CATTCCATATGTTAGGTGTTGCTGGTGTATTTGGTGGTTCATTATTCTCAGCTATGCACG 60727 Query 161170 GTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAGAACGAGTCCCAGAACTATG 161229 ||||||| || |||||||| | | |||||||| ||||| ||||| || ||| | | Sbjct 60726 GTTCACTTGTAACTTCTTCATTAATCCGTGAAACTACTGAAAACGAATCAGCTAACGAAG 60667 Query 161230 GTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTCG 161289 ||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||| | Sbjct 60666 GTTACAAATTTGGTCAAGAAGAAGAAACTTACAACATCGTAGCTGCTCATGGTTACTTTG 60607 Query 161290 GTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCG 161349 |||| | ||||||||||||||||| || |||||||| ||||| || ||||||||| | | Sbjct 60606 GTCGTTTAATCTTCCAATACGCTTCATTTAACAACTCTCGTTCATTACACTTCTTCTTAG 60547 Query 161350 CAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCA 161409 | || ||||| || || ||||| ||||||||||| | ||| | || || |||||||| | Sbjct 60546 CTGCTTGGCCAGTAGTTGGTATTTGGTTCACTGCTTTAGGTATTTCAACTATGGCATTTA 60487 Query 161410 ACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACA 161469 || | || || |||||||||||||| || | | ||| || || || | |||| Sbjct 60486 ACTTAAATGGTTTCAACTTCAACCAATCAGTTGTAGATTCACAAGGTCGTGTAATCAACA 60427 Query 161470 CCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATG 161529 | |||||||| || | || ||||||||| | ||||| ||||||||||| || | |||| Sbjct 60426 CTTGGGCTGATATTGTTAACCGTGCTAACTTAGGTATTGAAGTAATGCATGAAAGAAATG 60367 Query 161530 CTCACAACTTCCCTCTGGATCTCGCTG 161556 |||||||||| || || ||| | |||| Sbjct 60366 CTCACAACTTTCCACTTGATTTAGCTG 60340 Score = 529 bits (586), Expect = 2e-145 Identities = 725/1008 (72%), Gaps = 6/1008 (1%) Strand=Plus/Plus Query 163899 GACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGATTACTTCTTTTT 163958 || ||||||||| || ||||| || || ||||| ||||||||||| ||| | | || Sbjct 49515 GATGACTGGCTTCGTCGTGATCGTTTCGTATTTGTAGGTTGGTCTGGTTTATTATTATTA 49574 Query 163959 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACGTTTGTTACCAGTTGG 164018 || ||||||| | ||| | ||||||||| | ||||| | || |||||||| ||| Sbjct 49575 CCTTGTGCTTATTTAGCATTAGGTGGCTGGTTAACTGGAATTACATTTGTTACATCATGG 49634 Query 164019 TACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 164078 || || || ||| | || ||| | | || ||| ||||||| | ||||| || || Sbjct 49635 TATACACATGGTTTAGCTTCTTCATTTTTAGAAGGTTGTAATTTCTTAACAGCTGCAGTT 49694 Query 164079 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164138 || || ||||| || |||||||||||| | | || | ||||| || || | || Sbjct 49695 TCTACACCTGCAAATAGTATGGGTCATTCATTATTATTATTATGGGGCCCAGAAGCACAA 49754 Query 164139 GGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGA 164198 || ||||| | | | ||||| ||| | || || | ||| ||||||| || || || || Sbjct 49755 GGCGACTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACTTTTGTTGCATTACATGGT 49814 Query 164199 TCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATC 164258 || || ||| | || ||||| ||| | || || ||||| ||||||||| ||| || Sbjct 49815 TCATTTGCTTTAATTGGTTTTATGTTACGTCAATTTGAGATTGCACGTTCAGTAAAAATT 49874 Query 164259 CGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTT 164318 ||||| || || || || || ||||| | || ||||| || || || |||||| | Sbjct 49875 CGTCCATATAACGCAATCGCTTTCTCAGCACCAATTGCAGTTTTCGTATCAGTTTTCTTA 49934 Query 164319 ATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATC 164378 || || ||| | || |||||| | ||||||||||| || ||||| || || || ||| Sbjct 49935 ATCTATCCTTTAGGTCAATCTGGCTGGTTCTTTGCACCAAGTTTTGGTGTTGCCGCAATC 49994 Query 164379 TTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACTCAACCCCTTCCATATG 164438 ||| |||| || | ||| |||||||||||||||||||||| | ||||| ||||||||| Sbjct 49995 TTCCGATTTATCCTATTCTTCCAAGGTTTCCATAACTGGACTTTAAACCCATTCCATATG 50054 Query 164439 ATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTA 164498 |||||||| || || | | |||| || | || |||||||| |||||||| || ||| Sbjct 50055 ATGGGTGTAGCTGGTGTTTTAGGTGCAGCGTTACTATGTGCTATCCATGGTGCAACTGTA 50114 Query 164499 GAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAAGGCATTCGAGCCTACT 164558 || || || || |||||||||||||| ||||||| ||| ||||| | || ||| Sbjct 50115 GAAAACACATTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGCATTTAACCCAACT 50174 Query 164559 CAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGT 164618 |||| ||||| || || || ||||| ||||| || || |||||||| || ||||||||| Sbjct 50175 CAAGCTGAAGAAACATATTCAATGGTAACTGCGAATCGTTTCTGGTCACAAATTTTTGGT 50234 Query 164619 ATTGC--TTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGTCATGG 164676 | || ||||| ||||| |||||||| || ||||||||| | ||||| || || | | Sbjct 50235 GTAGCATTTTCA--AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTG 50292 Query 164677 GACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCTTCGTGCTTATGATT 164736 | | |||| ||| | ||||| | | ||| | || | || | ||||| ||||||| Sbjct 50293 GTTTATGGATGAGTGCAATTGGCGTAGTAGGTTTAGCTTTAAACTTACGTGCATATGATT 50352 Query 164737 TTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGACGTTCTATACGAAGA 164796 |||| ||||| || ||| | || || || ||||||||||| || || |||||||| || | Sbjct 50353 TTGTATCTCAAGAAATTCGTGCTGCGGAAGATCCTGAATTCGAAACTTTCTATACAAAAA 50412 Query 164797 A-CATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGACCAGCCACACGAA 164855 | ||| | | ||||||| | || || ||||||||| | ||| ||||| || ||| Sbjct 50413 ATCAT-TTATTAGATGAAGGTGTTCGAGCTTGGATGGCTGCTCAAGATCAGCCTCATGAA 50471 Query 164856 TCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCTAA 164903 || ||||| |||||||| || | || | || ||||| || ||| Sbjct 50472 AAATTAGTATTCCCAGAGGAGGTATTACCACGTGGAAACGCTCTTTAA 50519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559321847392000