Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1022 87.8 3e-15 seq21 87.8 3e-15 >seq1022 Length=134933 Score = 87.8 bits (96), Expect = 3e-15 Identities = 216/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||| ||| | |||| ||| || |||||| || |||| ||| Sbjct 133561 GGGGAGTGAAAGAGAACATGAAACCGTAAGCTGACAAGCAGTGGGAG------GATAATC 133614 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | | || |||||||| Sbjct 133615 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGAAGTGGCAGGGTTAAGGA 133673 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGC 190 || || | |||| ||| ||||||||| || || ||||||| ||| | Sbjct 133674 GTTATATCCGG--AGCCCAAGCGAAAGCGAGTCTGAATAGGGCGATACAGTCACTTCTTA 133731 Query 191 TAGACGCGAAACCTTG-TGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| ||| | ||||||| || | |||||||||| |||||| | | Sbjct 133732 TGGACCCGAA-CCTGGATGATCTAATCATGGCCAGGTTGAAGCTTGGGTAACACCAAGTC 133790 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||| | ||||||| | | ||||||||||| Sbjct 133791 GAGGACCGAACCGACCGATGTTGAAAAATCGGCGGATGAGCTGTGATTAGGGGTGAAATT 133850 Query 310 CCAATCAAACTGGGAAATAGCT 331 |||||| || | || ||||| Sbjct 133851 CCAATCGAATTCAGAGCTAGCT 133872 >seq21 Length=95773 Score = 87.8 bits (96), Expect = 3e-15 Identities = 216/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||| ||| | |||| ||| || |||||| || |||| ||| Sbjct 5416 GGGGAGTGAAAGAGAACATGAAACCGTAAGCTGACAAGCAGTGGGAG------GATAATC 5363 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | | || |||||||| Sbjct 5362 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGAAGTGGCAGGGTTAAGGA 5304 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGC 190 || || | |||| ||| ||||||||| || || ||||||| ||| | Sbjct 5303 GTTATATCCGG--AGCCCAAGCGAAAGCGAGTCTGAATAGGGCGATACAGTCACTTCTTA 5246 Query 191 TAGACGCGAAACCTTG-TGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| ||| | ||||||| || | |||||||||| |||||| | | Sbjct 5245 TGGACCCGAA-CCTGGATGATCTAATCATGGCCAGGTTGAAGCTTGGGTAACACCAAGTC 5187 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||| | ||||||| | | ||||||||||| Sbjct 5186 GAGGACCGAACCGACCGATGTTGAAAAATCGGCGGATGAGCTGTGATTAGGGGTGAAATT 5127 Query 310 CCAATCAAACTGGGAAATAGCT 331 |||||| || | || ||||| Sbjct 5126 CCAATCGAATTCAGAGCTAGCT 5105 Score = 87.8 bits (96), Expect = 3e-15 Identities = 216/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Plus Query 12 ggggggTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||| ||| | |||| ||| || |||||| || |||| ||| Sbjct 90437 GGGGAGTGAAAGAGAACATGAAACCGTAAGCTGACAAGCAGTGGGAG------GATAATC 90490 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| ||| | | | || |||||||| Sbjct 90491 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTTA-TAGGAAGTGGCAGGGTTAAGGA 90549 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG-AGTTGGTGGCGC 190 || || | |||| ||| ||||||||| || || ||||||| ||| | Sbjct 90550 GTTATATCCGG--AGCCCAAGCGAAAGCGAGTCTGAATAGGGCGATACAGTCACTTCTTA 90607 Query 191 TAGACGCGAAACCTTG-TGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 | ||| |||| ||| | ||||||| || | |||||||||| |||||| | | Sbjct 90608 TGGACCCGAA-CCTGGATGATCTAATCATGGCCAGGTTGAAGCTTGGGTAACACCAAGTC 90666 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||| | ||||||| | | ||||||||||| Sbjct 90667 GAGGACCGAACCGACCGATGTTGAAAAATCGGCGGATGAGCTGTGATTAGGGGTGAAATT 90726 Query 310 CCAATCAAACTGGGAAATAGCT 331 |||||| || | || ||||| Sbjct 90727 CCAATCGAATTCAGAGCTAGCT 90748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972786692096