Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1010 313 4e-83 seq1023 277 3e-72 >seq1010 Length=4219 Score = 313 bits (346), Expect = 4e-83 Identities = 226/256 (88%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||| ||| | Sbjct 1202 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 1145 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||| || ||||||||| ||||||||||||||||||| | |||||||||||| Sbjct 1144 CTCGTTGAAGACTAATAATTGCAATAATCTATCCCCATCACGATGCAGTTTCAAAGATTA 1085 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||| |||| |||| ||||| |||| || ||||||| |||||||||||||||||||||| Sbjct 1084 CCCAGACCCTTCGGTCAAGG--ATAGGCTTGTTGAATGCATCAGTGTAGCGCGCGTGCGG 1027 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||| | Sbjct 1026 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCATACTTCCATTGACTAAACG 967 Query 241 GCCAT-CTCCCTCGAA 255 | || |||||| || Sbjct 966 CCAATAGTCCCTCTAA 951 >seq1023 Length=7928 Score = 277 bits (306), Expect = 3e-72 Identities = 207/239 (87%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| | |||||| ||||||||||| ||| | Sbjct 5037 GTACAAAGGGCAGGGACGTAATCAACGCGAGCTGG-TGACTCACGCTTACTAGGTATT-C 4980 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||||||||| |||||||||| ||||| | ||||| |||||| Sbjct 4979 CTCGTTGAAGAGCAATAATTGCAATGCTCTATCCCCAGCACGACTGAGTTTCACAAGATT 4920 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | || || ||||||||| ||||| || | ||||||||||||||||||| Sbjct 4919 ACCCAAGCTTCTCAGCTAAGGTGATAAACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCG 4860 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAA 238 ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 4859 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTTGGCTAAA 4801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751990034120