Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1023 571 2e-160 seq1010 334 3e-89 seq246 145 3e-32 >seq1023 Length=7928 Score = 571 bits (632), Expect = 2e-160 Identities = 546/692 (79%), Gaps = 43/692 (6%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| ||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 5899 TGTGATACACGTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 5958 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 5959 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 6018 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||| || || Sbjct 6019 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATT 6078 Query 203 GCAACCAGACTTGCCCG-CAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGG 261 | | ||| | || | ||| | ||| | || | || | || ||| |||| || Sbjct 6079 GAAGTCAGTCGTGTTCTTCAGAT--TCAGCTGGTTCTTC---CAGTCTACT--TCTGTGG 6131 Query 262 T-CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGG 320 | || || |||||| | | | | ||||||||| |||||||| | ||| | | Sbjct 6132 AACGGGTCAACATCAGTTTTGTCCGGTGGATAAAGGTAGTAGGAATGTGACTCCC--CCG 6189 Query 321 GGGGTGTTATAGCC--------------CGGGGTG--------GAATGCGGCCCGCCT-- 356 || ||||||||||| | ||||| || ||| || ||||| Sbjct 6190 GGAGTGTTATAGCCTATTATTGCATACACTGGGTGAGACTGAGGACTGCAGCTCGCCTTT 6249 Query 357 -GGACTGAGGTCCG---CGCTCCGGCT-AGGATGCTGGCGTAATGGTTGTAAGCGGCCCG 411 || | | || | || || ||| |||||| || | |||||| | ||| || |||| Sbjct 6250 TGGCCGGTCTTCGGACACGTTCGAGCTTAGGATGTTGACATAATGGCTTTAAACGACCCG 6309 Query 412 TCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTG 471 ||||| |||||||||||||||||||||||| | |||||||||||| ||||||||| || | Sbjct 6310 TCTTGAAACACGGACCAAGGAGTCTAACATATCTGCGAGTGTTTGAGTGTCAAACTCGAG 6369 Query 472 CGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGA 531 |||||||||||||||||| | || |||| || | || ||||| ||||||||||| || Sbjct 6370 CGCGTAATGAAAGTGAACTG-GGAGGGATCCGTTT--GGAGCACCTTCGACCGATCCGGA 6426 Query 532 TGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTAT 591 ||| | | |||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 6427 TGTTTACTGATGGATTTGAGTAAGAGCATATATGCTGGGACCCGAAAGATGGTGAACTAT 6486 Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 |||||||||||| |||||||| ||||||||||||||||||||| |||| ||||| ||||| Sbjct 6487 GCCTGAATAGGGCGAAGCCAGGGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGC 6546 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||||||||| Sbjct 6547 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 6578 >seq1010 Length=4219 Score = 334 bits (370), Expect = 3e-89 Identities = 484/661 (73%), Gaps = 29/661 (4%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||||||||||||| | || | || ||||||| | ||||| | Sbjct 2228 TTCAAAGAGTCGGGTTGCTTGGGAATGCAGCCCAAATTTGGTGGTAAATCCCATCTAAGG 2287 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 2288 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 2347 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACC-AGAC 212 ||| |||||||||||||||| | |||||||||||| |||||||| ||| | | ||| Sbjct 2348 TTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGAGGGGGAAGCGTTTGAATGCTAGAG 2407 Query 213 TTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCT-TCTGC--GGT-CAGGCC 268 | || | || ||| | || | | ||| || || | | ||| ||| | |||| Sbjct 2408 T-GCGCCTAG--GCTTATG-GGTTCTTAA--CGGAGCTCTGTATGTGCTAGGTGCTGGCC 2461 Query 269 AGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCC--CTTCGGGGGGTG 326 ||||| | | || | ||||||| || ||| || ||| || | | || Sbjct 2462 AGCATGGGTTAGGCGAGCGGGATAAACGCT--GGGGTTGATACCCGGTCTATGCCGCTTG 2519 Query 327 TTATAGCCCGGGGTGGAATGCGGCCCGCCTGGACTGAGGTCCGCGCTCCGG-CT-AGGAT 384 | | | || ||| || | |||| || || || | || | | || | ||| Sbjct 2520 CTTGACCAAGGCGTG-AAGACTGCCCT--TGTCCTTCGG---GAACTGCAGTCTCAAGAT 2573 Query 385 GCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTA 444 |||||| || | || || || ||||||||| |||||||||||||||||||||||| || Sbjct 2574 GCTGGCAAAAGGCTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTA 2633 Query 445 TGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCC 503 ||||||| |||||| |||||| || |||||| |||| ||| || || || | Sbjct 2634 TGCGAGTTGGTGGGTGGAAAACCCATGAAGCGTAAGGAAACTGACTGG---TGAGATGGC 2690 Query 504 GTGAGGGTGCACCATCGACCGATCCTGA-TGTCTTCGGATGGATTTGAGTAAGAGCATAG 562 || | |||| |||||||||| | || | ||| | | || ||||||| ||||||| Sbjct 2691 CTGTGCCTGCATCATCGACCGACCATGCGTTTCTGCAAAAGG-TTTGAGTGCGAGCATAC 2749 Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| || Sbjct 2750 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGGTGAAAACCT 2809 Query 623 GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCG 682 |||||||||||| || || ||| ||||||||||| | || | ||||||||||||||| Sbjct 2810 GGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGGGGCG 2869 Query 683 A 683 | Sbjct 2870 A 2870 >seq246 Length=36864 Score = 145 bits (160), Expect = 3e-32 Identities = 107/125 (86%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 31361 ATACCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGGTGAAA 31420 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||| || || ||| ||||||||||| | || | ||||||||||| Sbjct 31421 ACCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGG 31480 Query 679 GGCGA 683 ||||| Sbjct 31481 GGCGA 31485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079970656400