Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq21 122 1e-25 seq1022 114 2e-23 >seq21 Length=95773 Score = 122 bits (134), Expect = 1e-25 Identities = 175/243 (72%), Gaps = 18/243 (7%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || |||| Sbjct 4033 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACC 4091 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||| || || || |||||||| ||| Sbjct 4092 TGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTGCGACC--------CTCC----- 4138 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 |||| | || || ||| |||||||| ||||||||||||||| | |||||||| ||||| Sbjct 4139 -CGTTTAA-AG-AG-GGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAGTTCCT 4194 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||||| | || | |||| |||||||||||| | |||||||||||||| | Sbjct 4195 TAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGTTTCAG 4254 Query 246 GTA 248 ||| Sbjct 4255 GTA 4257 Score = 122 bits (134), Expect = 1e-25 Identities = 173/243 (71%), Gaps = 19/243 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || ||| || | ||||| | ||| || |||| Sbjct 91819 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACC 91761 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||| || || || |||||||| ||| Sbjct 91760 TGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTGCGACC--------CTCC----- 91714 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 |||| | || ||| |||||||| ||||||||||||||| | |||||||| ||||| Sbjct 91713 -CGTTAAAGAG----GGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAGTTCCT 91659 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | ||||| | || | |||| |||||||||||| | |||||||||||||| | Sbjct 91658 TAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGTTTCAG 91599 Query 246 GTA 248 ||| Sbjct 91598 GTA 91596 >seq1022 Length=134933 Score = 114 bits (126), Expect = 2e-23 Identities = 164/231 (71%), Gaps = 19/231 (8%) Strand=Plus/Minus Query 18 GGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGT 77 ||||||||||||| || ||| || | ||||| | ||| || ||||||||||||| | Sbjct 134931 GGGCAGGCGTCAGCCCCCATATATTGTCTTAC-GACTTTGCGGAGACCTGTGTTTTTGAT 134873 Query 78 AAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGC 137 ||||||| || || || |||||||| ||| |||| | || Sbjct 134872 AAACAGTTGCCAGAACCTCGTCACTGCGACC--------CTCC------CGTTAAAGAG- 134828 Query 138 AGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTC 197 ||| |||||||| ||||||||||||||| | |||||||| ||||||| | ||||| Sbjct 134827 ---GGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAGTTCCTTAGAGAGAGTTC 134771 Query 198 ACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | || | |||| |||||||||||| | |||||||||||||| |||| Sbjct 134770 TCTCGCGCCCCTTGGTATTCTCTACCAACCTACCTGTGTCGGTTTCAGGTA 134720 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694390797464