Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq21 116 9e-24 seq616 109 1e-21 seq469 109 1e-21 seq72 109 1e-21 seq320 86.0 2e-14 seq1022 84.2 6e-14 seq1271 75.2 3e-11 >seq21 Length=95773 Score = 116 bits (128), Expect = 9e-24 Identities = 210/309 (68%), Gaps = 35/309 (11%) Strand=Plus/Minus Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG-----CG--- 177 || || || ||||| ||||||||| |||||||||||| || |||||| || Sbjct 91900 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 91841 Query 178 --TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 ||| ||||| | || |||||||||||| |||||||||||| ||| ||| | Sbjct 91840 ATTTA--TAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 91783 Query 236 CACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTT 295 ||| || ||||| ||| |||||||||| ||||||||| || ||| || || Sbjct 91782 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTG 91723 Query 296 CGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAG 355 ||||| | | ||| ||| ||||| |||||| |||||| Sbjct 91722 CGACCCTCCCG---TTAAAGAG-------------------GGCGCCCCTTCTTCCGAAG 91685 Query 356 TTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||| || |||||| |||||||| |||||||||| || ||||||||||||| Sbjct 91684 TTACGGGGCTAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTC 91625 Query 416 TACCCAACC 424 || |||||| Sbjct 91624 TA-CCAACC 91617 Score = 114 bits (126), Expect = 3e-23 Identities = 210/309 (68%), Gaps = 34/309 (11%) Strand=Plus/Plus Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG-----CG--- 177 || || || ||||| ||||||||| |||||||||||| || |||||| || Sbjct 3952 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 4011 Query 178 --TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 ||| ||||| | || |||||||||||| |||||||||||| ||| ||| | Sbjct 4012 ATTTA--TAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 4069 Query 236 CACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTT 295 ||| || ||||| ||| |||||||||| ||||||||| || ||| || || Sbjct 4070 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTG 4129 Query 296 CGACCGGCATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAG 355 ||||| | | ||| ||| ||||| |||||| |||||| Sbjct 4130 CGACCCTCCCGT--TTAAAGAG-------------------GGCGCCCCTTCTTCCGAAG 4168 Query 356 TTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTC 415 |||||| || |||||| |||||||| |||||||||| || ||||||||||||| Sbjct 4169 TTACGGGGCTAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCTCGCGCCCCTTGGTATTCTC 4228 Query 416 TACCCAACC 424 || |||||| Sbjct 4229 TA-CCAACC 4236 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | || ||||||| ||||||| ||||||||| ||| || Sbjct 2842 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATT 2901 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||| Sbjct 2902 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGG 2954 Score = 105 bits (116), Expect = 2e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | || ||||||| ||||||| ||||||||| ||| || Sbjct 93010 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATT 92951 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 125 ||||| ||||||||||||| ||||||| |||||| |||||||||||||||||| Sbjct 92950 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGG 92898 >seq616 Length=69036 Score = 109 bits (120), Expect = 1e-21 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| ||| ||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 60935 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 60876 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 || |||| ||| |||||| ||||| |||| |||| | ||| ||| | | | Sbjct 60875 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTC-----AGAGTT----GTT-GCTTTCACAA 60826 Query 191 TCAAT--TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 ||| | | |||||||||| |||||||||||| || ||||| | |||| || Sbjct 60825 CAAATTCTTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTT 60766 Query 249 GCAGAGTGCTGTGTTTT 265 ||| ||| ||||| ||| Sbjct 60765 GCAAAGTCCTGTGATTT 60749 >seq469 Length=76214 Score = 109 bits (120), Expect = 1e-21 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Minus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| ||| ||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 75579 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 75520 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 || |||| ||| |||||| ||||| |||| |||| | ||| ||| | | | Sbjct 75519 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTC-----AGAGTT----GTT-GCTTTCACAA 75470 Query 191 TCAAT--TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 ||| | | |||||||||| |||||||||||| || ||||| | |||| || Sbjct 75469 CAAATTCTTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTT 75410 Query 249 GCAGAGTGCTGTGTTTT 265 ||| ||| ||||| ||| Sbjct 75409 GCAAAGTCCTGTGATTT 75393 >seq72 Length=369545 Score = 109 bits (120), Expect = 1e-21 Identities = 144/197 (73%), Gaps = 12/197 (6%) Strand=Plus/Plus Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||||||| ||| ||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 13320 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 13379 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 || |||| ||| |||||| ||||| |||| |||| | ||| ||| | | | Sbjct 13380 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTC-----AGAGTT----GTT-GCTTTCACAA 13429 Query 191 TCAAT--TAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 ||| | | |||||||||| |||||||||||| || ||||| | |||| || Sbjct 13430 CAAATTCTTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTT 13489 Query 249 GCAGAGTGCTGTGTTTT 265 ||| ||| ||||| ||| Sbjct 13490 GCAAAGTCCTGTGATTT 13506 >seq320 Length=88325 Score = 86.0 bits (94), Expect = 2e-14 Identities = 118/164 (72%), Gaps = 12/164 (7%) Strand=Plus/Minus Query 126 ACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCG-----CG--- 177 || || || ||||| ||||||||| |||||||||||| || |||||| || Sbjct 3536 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 3477 Query 178 --TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTC 235 ||| ||||| | || |||||||||||| |||||||||||| ||| ||| | Sbjct 3476 ATTTA--TAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 3419 Query 236 CACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| || ||||| ||| |||||||||| ||||||||| || Sbjct 3418 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGC 3375 >seq1022 Length=134933 Score = 84.2 bits (92), Expect = 6e-14 Identities = 72/88 (82%), Gaps = 1/88 (1%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||||| |||||| |||||||||||| || |||||| |||||||| ||||||||| Sbjct 134827 GGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAGTTCCTTAGAGAGAGTTCTCT 134768 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACC 424 | || ||||||||||||||| |||||| Sbjct 134767 CGCGCCCCTTGGTATTCTCTA-CCAACC 134741 >seq1271 Length=21474 Score = 75.2 bits (82), Expect = 3e-11 Identities = 97/133 (73%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || || |||||||||| || | ||||||||||||||| | | | |||||||| | Sbjct 2351 TAAACCGCATCTTCACGGCTAATTCAATTTCACTGAGATACTGTTTGAGACAGCTGAAGC 2292 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTAC-CTTAGG 125 ||| |||| | |||| ||| || | | ||| | |||||||||||||||| |||| Sbjct 2291 ATCATTACTCTATTCATGCGGGACCACATTTAATGGCCAAGGAATTTCGCTACTCTTAAA 2232 Query 126 ACCGTTATTGTTA 138 | | |||| |||| Sbjct 2231 ATCCTTATAGTTA 2219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260782752256