Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq21 154 3e-35 seq1022 125 2e-26 seq320 111 3e-22 seq616 107 4e-21 seq469 107 4e-21 seq72 107 4e-21 >seq21 Length=95773 Score = 154 bits (170), Expect = 3e-35 Identities = 190/259 (73%), Gaps = 17/259 (7%) Strand=Plus/Minus Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC----------G 169 || || |||||||| ||||||||| || ||||||| || | ||||| | Sbjct 91900 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 91841 Query 170 ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATC 229 ||| | |||| | |||| ||||||| |||| |||||||||||||| || ||| || Sbjct 91840 ATT--TATAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 91783 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 ||||| |||||| || || ||||||||||||| |||||||| || | ||| || ||| Sbjct 91782 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTG 91723 Query 290 CG----GCCTGTCATAGACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 || || || | ||| ||| |||||||| || ||||||||||| | ||||||||| Sbjct 91722 CGACCCTCCCGTTAAAGA-GGGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAG 91664 Query 346 TTCCTTAACAATAGTTCTC 364 ||||||| | ||||||| Sbjct 91663 TTCCTTAGAGAGAGTTCTC 91645 Score = 149 bits (164), Expect = 1e-33 Identities = 189/259 (73%), Gaps = 16/259 (6%) Strand=Plus/Plus Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC----------G 169 || || |||||||| ||||||||| || ||||||| || | ||||| | Sbjct 3952 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 4011 Query 170 ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATC 229 ||| | |||| | |||| ||||||| |||| |||||||||||||| || ||| || Sbjct 4012 ATT--TATAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 4069 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 ||||| |||||| || || ||||||||||||| |||||||| || | ||| || ||| Sbjct 4070 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTG 4129 Query 290 CG-GCCTGTCATAGACA---GGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAG 345 || ||| | | | | ||| |||||||| || ||||||||||| | ||||||||| Sbjct 4130 CGACCCTCCCGTTTAAAGAGGGCGCCCCTTCTTCCGAAGTTACGGGGCTAGTTTGCCGAG 4189 Query 346 TTCCTTAACAATAGTTCTC 364 ||||||| | ||||||| Sbjct 4190 TTCCTTAGAGAGAGTTCTC 4208 Score = 105 bits (116), Expect = 1e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||||||||| | ||||||| | | ||| || Sbjct 2842 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATT 2901 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||| Sbjct 2902 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGG 2954 Score = 105 bits (116), Expect = 1e-20 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | | | |||||||||||||| | ||||||| | | ||| || Sbjct 93010 GCATCTTCACGGACAAGTCTATTTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATT 92951 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 ||||||||||||| ||||| ||||||| |||||| |||||||||||||||||| Sbjct 92950 ACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAGG 92898 >seq1022 Length=134933 Score = 125 bits (138), Expect = 2e-26 Identities = 127/164 (77%), Gaps = 5/164 (3%) Strand=Plus/Minus Query 205 GGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTA 264 |||||||||||||| || ||| || ||||| |||||| || || ||||||||||||| || Sbjct 134931 GGGCAGGCGTCAGCCCCCATATATTGTCTTACGACTTTGCGGAGACCTGTGTTTTTGATA 134872 Query 265 AACAGTCGCTTGGGCCTATTCTCTGCG----GCCTGTCATAGACAGGCACCCCTTCTCCC 320 |||||| || | ||| || ||||| || || | ||| ||| |||||||| || Sbjct 134871 AACAGTTGCCAGAACCTCGTCACTGCGACCCTCCCGTTAAAGA-GGGCGCCCCTTCTTCC 134813 Query 321 TAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| | |||||||||||||||| | ||||||| Sbjct 134812 GAAGTTACGGGGCTAGTTTGCCGAGTTCCTTAGAGAGAGTTCTC 134769 >seq320 Length=88325 Score = 111 bits (122), Expect = 3e-22 Identities = 135/185 (73%), Gaps = 12/185 (6%) Strand=Plus/Minus Query 120 ACCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC----------G 169 || || |||||||| ||||||||| || ||||||| || | ||||| | Sbjct 3536 ACTGTCATAGTTACAGCCGCCGTTCACCGGGGCTTCGGTCGTCAGCTTCTAAATCCGAAG 3477 Query 170 ATTGCTCTAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATC 229 ||| | |||| | |||| ||||||| |||| |||||||||||||| || ||| || Sbjct 3476 ATT--TATAACCAACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATATATT 3419 Query 230 GTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG 289 ||||| |||||| || || ||||||||||||| |||||||| || | ||| || ||| Sbjct 3418 GTCTTACGACTTTGCGGAGACCTGTGTTTTTGATAAACAGTTGCCAGAACCTCGTCACTG 3359 Query 290 CGGCC 294 || || Sbjct 3358 CGACC 3354 >seq616 Length=69036 Score = 107 bits (118), Expect = 4e-21 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||| ||| ||||||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 60935 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 60876 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 || ||||| ||| |||||| || || ||| || | | || | || | | |||| || Sbjct 60875 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTCAG---AGTTGTT-GCTTTCAC-AACAAAT 60821 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | | | ||||| |||| ||||||||||||| ||||| | || || | || | || Sbjct 60820 TC---TTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTTGC 60764 Query 245 AGAAACCTGTGTTTT 259 | | |||||| ||| Sbjct 60763 AAAGTCCTGTGATTT 60749 >seq469 Length=76214 Score = 107 bits (118), Expect = 4e-21 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||| ||| ||||||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 75579 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 75520 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 || ||||| ||| |||||| || || ||| || | | || | || | | |||| || Sbjct 75519 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTCAG---AGTTGTT-GCTTTCAC-AACAAAT 75465 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | | | ||||| |||| ||||||||||||| ||||| | || || | || | || Sbjct 75464 TC---TTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTTGC 75408 Query 245 AGAAACCTGTGTTTT 259 | | |||||| ||| Sbjct 75407 AAAGTCCTGTGATTT 75393 >seq72 Length=369545 Score = 107 bits (118), Expect = 4e-21 Identities = 143/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 ||||||| ||| ||||||||| | ||| |||||||||||||||||||||||| ||| | Sbjct 13320 TTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATTTCGCTACCTTAGAACCCT 13379 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 || ||||| ||| |||||| || || ||| || | | || | || | | |||| || Sbjct 13380 TAGAGTTAGGGCTGCCGTTCACCGGTCCTTCAG---AGTTGTT-GCTTTCAC-AACAAAT 13434 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 | | | ||||| |||| ||||||||||||| ||||| | || || | || | || Sbjct 13435 TC---TTATCTTCCGGCACTGGGCAGGCGTCAGACTTTATACTTAGTATTTCTACGTTGC 13491 Query 245 AGAAACCTGTGTTTT 259 | | |||||| ||| Sbjct 13492 AAAGTCCTGTGATTT 13506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062385466368