Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1022 385 1e-104 seq21 385 1e-104 >seq1022 Length=134933 Score = 385 bits (426), Expect = 1e-104 Identities = 383/492 (78%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 131381 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGCGGTT 131440 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| | || ||||||||||||||| ||||||| | || | |||||||| Sbjct 131441 TAATTCGATGATACACGAAGAACCTTACCAGGGATTGACATGCCAGGAACTTTCTAGAGA 131500 Query 127 TAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| | | || || || || | ||||||| ||||||| |||||||||||||| Sbjct 131501 TAGATTGGTGCCTTTTTTAGGAACCTGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGT 131560 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||||| ||| | |||||||| |||||||||||||||| |||||| | || Sbjct 131561 GCCGTGAGGTGTAGAGTTAAGTCTTCTAACGAGCGCAACCCTTGTCTTTAGTTAAAACCA 131620 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || || ||||||| ||||||||||| |||||||||||||| | ||| ||||| Sbjct 131621 TTT-----GGAACTCTAAAGAGACTGCCGGTGT-AAACCGGAGGAAGGAGAGGATGACGT 131674 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| ||||||||||| |||||||||| ||| |||||||| || |||| | Sbjct 131675 CAAGTCAGCATGCCCCTTACATCCTGGGCTACACGCGTAATACAATGGCTAAGACAATAG 131734 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 |||||||| |||||||| |||| |||| ||| || |||||||| |||||||| | Sbjct 131735 GCAGCGAACCCGCGAGGGGAAGCGAATCTAGCAAACTTAGCCTCAGTTCAGATTGTAGGC 131794 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| || ||||||| ||||||||||||||||| | ||||| || | ||||| Sbjct 131795 TGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCTATACGGCGGTG 131854 Query 485 AATACGTTCCCG 496 ||||||||| || Sbjct 131855 AATACGTTCTCG 131866 >seq21 Length=95773 Score = 385 bits (426), Expect = 1e-104 Identities = 383/492 (78%), Gaps = 8/492 (2%) Strand=Plus/Minus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 7596 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGCGGTT 7537 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| | || ||||||||||||||| ||||||| | || | |||||||| Sbjct 7536 TAATTCGATGATACACGAAGAACCTTACCAGGGATTGACATGCCAGGAACTTTCTAGAGA 7477 Query 127 TAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| | | || || || || | ||||||| ||||||| |||||||||||||| Sbjct 7476 TAGATTGGTGCCTTTTTTAGGAACCTGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGT 7417 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||||| ||| | |||||||| |||||||||||||||| |||||| | || Sbjct 7416 GCCGTGAGGTGTAGAGTTAAGTCTTCTAACGAGCGCAACCCTTGTCTTTAGTTAAAACCA 7357 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || || ||||||| ||||||||||| |||||||||||||| | ||| ||||| Sbjct 7356 TTT-----GGAACTCTAAAGAGACTGCCGGTGT-AAACCGGAGGAAGGAGAGGATGACGT 7303 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| ||||||||||| |||||||||| ||| |||||||| || |||| | Sbjct 7302 CAAGTCAGCATGCCCCTTACATCCTGGGCTACACGCGTAATACAATGGCTAAGACAATAG 7243 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 |||||||| |||||||| |||| |||| ||| || |||||||| |||||||| | Sbjct 7242 GCAGCGAACCCGCGAGGGGAAGCGAATCTAGCAAACTTAGCCTCAGTTCAGATTGTAGGC 7183 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| || ||||||| ||||||||||||||||| | ||||| || | ||||| Sbjct 7182 TGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCTATACGGCGGTG 7123 Query 485 AATACGTTCCCG 496 ||||||||| || Sbjct 7122 AATACGTTCTCG 7111 Score = 385 bits (426), Expect = 1e-104 Identities = 383/492 (78%), Gaps = 8/492 (2%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 88257 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGATTATGCGGTT 88316 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGA 126 |||||||| | || ||||||||||||||| ||||||| | || | |||||||| Sbjct 88317 TAATTCGATGATACACGAAGAACCTTACCAGGGATTGACATGCCAGGAACTTTCTAGAGA 88376 Query 127 TAGAG-GTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGT 185 |||| | | || || || || | ||||||| ||||||| |||||||||||||| Sbjct 88377 TAGATTGGTGCCTTTTTTAGGAACCTGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGT 88436 Query 186 GTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCA 245 | |||||| ||| | |||||||| |||||||||||||||| |||||| | || Sbjct 88437 GCCGTGAGGTGTAGAGTTAAGTCTTCTAACGAGCGCAACCCTTGTCTTTAGTTAAAACCA 88496 Query 246 TTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGT 305 || || ||||||| ||||||||||| |||||||||||||| | ||| ||||| Sbjct 88497 TTT-----GGAACTCTAAAGAGACTGCCGGTGT-AAACCGGAGGAAGGAGAGGATGACGT 88550 Query 306 CAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGG 365 ||| ||| ||||||||||| |||||||||| ||| |||||||| || |||| | Sbjct 88551 CAAGTCAGCATGCCCCTTACATCCTGGGCTACACGCGTAATACAATGGCTAAGACAATAG 88610 Query 366 GCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTC 425 |||||||| |||||||| |||| |||| ||| || |||||||| |||||||| | Sbjct 88611 GCAGCGAACCCGCGAGGGGAAGCGAATCTAGCAAACTTAGCCTCAGTTCAGATTGTAGGC 88670 Query 426 TGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTG 484 ||||||||| || ||||||| ||||||||||||||||| | ||||| || | ||||| Sbjct 88671 TGCAACTCGCCTGCATGAAGCCGGAATCGCTAGTAATCGCCGGTCAGCTATACGGCGGTG 88730 Query 485 AATACGTTCCCG 496 ||||||||| || Sbjct 88731 AATACGTTCTCG 88742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503979425280