Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1023 383 3e-104 seq1010 315 1e-83 >seq1023 Length=7928 Score = 383 bits (424), Expect = 3e-104 Identities = 239/257 (93%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4892 ACTCGCTGGCTCAGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 4833 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| |||||| | ||||| ||||||||||||||| |||| Sbjct 4832 CCTGTTATTGCCTCAAACTTCCTTTGGCTAAACGCCAAAAGTCCCTCTAAGAAGACAGCT 4773 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 ||| ||| || || | |||||||||||||||||||||||||||||||||||||||| Sbjct 4772 GCCAGCCAAAGCCGGCATGTCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 4713 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4712 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 4653 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 4652 AGAGCTATCAATCTGTC 4636 >seq1010 Length=4219 Score = 315 bits (348), Expect = 1e-83 Identities = 217/244 (89%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1046 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 987 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCG 135 | |||||||||| || | ||||||||||||||||||||| |||||| | | | | | Sbjct 986 ATACTTCCATTGACTAAACGCCAATAGTCCCTCTAAGAAGTCAGCCAGCTGCAAAAAGCA 927 Query 136 A-TGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | || | |||||||||||| | ||||||||||||||| |||||| |||| ||||| || Sbjct 926 ACTGAGACTATTTAGCAGGCTGAGGTCTCGTTCGTTACCGGAATCAACCTGACAAGGCAA 867 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 866 CCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAATC 807 Query 255 TGTC 258 |||| Sbjct 806 TGTC 803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796789440408