Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq21 78.8 1e-12 >seq21 Length=95773 Score = 78.8 bits (86), Expect = 1e-12 Identities = 89/121 (74%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNN 105 ||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 2835 GTAGTCCGCATCTTCACGGACAAGTCTATTTCACCGAG-TCTCTCTCCGAGACAGCGTTC 2893 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| || ||||||||||||| ||||||| |||||| ||||||||||||||||| Sbjct 2894 TGATCATTACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAG 2953 Query 166 G 166 | Sbjct 2954 G 2954 Score = 78.8 bits (86), Expect = 1e-12 Identities = 89/121 (74%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 47 GTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGNNNNN 105 ||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 93017 GTAGTCCGCATCTTCACGGACAAGTCTATTTCACCGAG-TCTCTCTCCGAGACAGCGTTC 92959 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 ||| || ||||||||||||| ||||||| |||||| ||||||||||||||||| Sbjct 92958 TGATCATTACGCCTTTCGTGCAGGTCGAAACTTACTCGACAATGAATTTCGCTACCTTAG 92899 Query 166 G 166 | Sbjct 92898 G 92898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192748232