Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1022 233 4e-59 seq21 233 4e-59 >seq1022 Length=134933 Score = 233 bits (258), Expect = 4e-59 Identities = 240/309 (78%), Gaps = 16/309 (5%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||||| || |||||||||||||||||| Sbjct 130920 CACGCGGTATTG-CTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTC 130862 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 130861 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 130802 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATCCGAC-CTAGGCTC 206 || |||||||||||||| ||| ||| || |||||||||||||||| ||| | || ||| Sbjct 130801 ACTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC 130742 Query 207 ATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTA 266 ||| | || | | | || ||| | | | | |||| ||||||| Sbjct 130741 -TCTCTTGGC----------AGTTTTCACT--TTTAGCTCCTCAGCATTATGGGGTATTA 130695 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326 || | |||||| |||||||||||| | ||| | ||| || |||||||||||||| Sbjct 130694 GCAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCG 130635 Query 327 TCCGCCGCT 335 |||||| || Sbjct 130634 TCCGCCACT 130626 >seq21 Length=95773 Score = 233 bits (258), Expect = 4e-59 Identities = 240/309 (78%), Gaps = 16/309 (5%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||||| || |||||||||||||||||| Sbjct 8057 CACGCGGTATTG-CTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTC 8115 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 8116 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 8175 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATCCGAC-CTAGGCTC 206 || |||||||||||||| ||| ||| || |||||||||||||||| ||| | || ||| Sbjct 8176 ACTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC 8235 Query 207 ATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTA 266 ||| | || | | | || ||| | | | | |||| ||||||| Sbjct 8236 -TCTCTTGGC----------AGTTTTCACT--TTTAGCTCCTCAGCATTATGGGGTATTA 8282 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326 || | |||||| |||||||||||| | ||| | ||| || |||||||||||||| Sbjct 8283 GCAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCG 8342 Query 327 TCCGCCGCT 335 |||||| || Sbjct 8343 TCCGCCACT 8351 Score = 233 bits (258), Expect = 4e-59 Identities = 240/309 (78%), Gaps = 16/309 (5%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||||| |||| || |||||||||||||||||||| || |||||||||||||||||| Sbjct 87796 CACGCGGTATTG-CTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTC 87738 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| | Sbjct 87737 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCT 87678 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTA-CCTCACCAACTAGCTAATCCGAC-CTAGGCTC 206 || |||||||||||||| ||| ||| || |||||||||||||||| ||| | || ||| Sbjct 87677 ACTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC 87618 Query 207 ATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTA 266 ||| | || | | | || ||| | | | | |||| ||||||| Sbjct 87617 -TCTCTTGGC----------AGTTTTCACT--TTTAGCTCCTCAGCATTATGGGGTATTA 87571 Query 267 GCGTCCGTTTCCGAACGTTATCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCCG 326 || | |||||| |||||||||||| | ||| | ||| || |||||||||||||| Sbjct 87570 GCAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCG 87511 Query 327 TCCGCCGCT 335 |||||| || Sbjct 87510 TCCGCCACT 87502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071985335040