Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1022 250 9e-64 seq21 250 9e-64 >seq1022 Length=134933 Score = 250 bits (276), Expect = 9e-64 Identities = 340/470 (72%), Gaps = 26/470 (6%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | | || |||||| ||||| Sbjct 133903 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCTGAATTCGATTGGAATTTCA 133844 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || |||||||||||| || || Sbjct 133843 CCCCTAATCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGG 133784 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| ||||||||||| ||||| ||||||| | |||||||| | | Sbjct 133783 TGTTACCCAAGCTTCAACCTGGCCATGATTAGATCATCCAGGTTCGGGTCCATAAGAAGT 133724 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTAACC 372 ||| |||||||||| |||||||||||||| |||| || | || |||||| Sbjct 133723 GACTGTATCGCCCTATTCAGACTCGCTTTCGCTTGGGCT-CCGGATATAACTCCTTAACC 133665 Query 373 TCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || ||| | | || |||| |||||||||||||| |||||||| |||| | || Sbjct 133664 CTGC--CACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAT--TAT 133609 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 | |||| || | |||| || | ||||||| || || |||||||| Sbjct 133608 C---------------CTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTC 133564 Query 492 CCCGCCA-GGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| || ||||| || |||||||||||| || | |||||| | | ||||||||||| | Sbjct 133563 CCCGACAGGGGGTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCA 133504 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 133503 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTCCA 133454 >seq21 Length=95773 Score = 250 bits (276), Expect = 9e-64 Identities = 340/470 (72%), Gaps = 26/470 (6%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | | || |||||| ||||| Sbjct 5074 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCTGAATTCGATTGGAATTTCA 5133 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || |||||||||||| || || Sbjct 5134 CCCCTAATCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGG 5193 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| ||||||||||| ||||| ||||||| | |||||||| | | Sbjct 5194 TGTTACCCAAGCTTCAACCTGGCCATGATTAGATCATCCAGGTTCGGGTCCATAAGAAGT 5253 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTAACC 372 ||| |||||||||| |||||||||||||| |||| || | || |||||| Sbjct 5254 GACTGTATCGCCCTATTCAGACTCGCTTTCGCTTGGGCT-CCGGATATAACTCCTTAACC 5312 Query 373 TCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || ||| | | || |||| |||||||||||||| |||||||| |||| | || Sbjct 5313 CTGC--CACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAT--TAT 5368 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 | |||| || | |||| || | ||||||| || || |||||||| Sbjct 5369 C---------------CTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTC 5413 Query 492 CCCGCCA-GGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| || ||||| || |||||||||||| || | |||||| | | ||||||||||| | Sbjct 5414 CCCGACAGGGGGTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCA 5473 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 5474 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTCCA 5523 Score = 250 bits (276), Expect = 9e-64 Identities = 340/470 (72%), Gaps = 26/470 (6%) Strand=Plus/Minus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||||||||| ||||||| | | | || |||||| ||||| Sbjct 90779 CGCTGCGCCTCAACGCATTTCGGGGAGATCCAGCTAGCTCTGAATTCGATTGGAATTTCA 90720 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||||| |||||| | | |||||||| | || |||||||||||| || || Sbjct 90719 CCCCTAATCACAGCTCATCCGCCGATTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGG 90660 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | |||||| ||||||||||| ||||| ||||||| | |||||||| | | Sbjct 90659 TGTTACCCAAGCTTCAACCTGGCCATGATTAGATCATCCAGGTTCGGGTCCATAAGAAGT 90600 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCA---CACGGGTTAACC 372 ||| |||||||||| |||||||||||||| |||| || | || |||||| Sbjct 90599 GACTGTATCGCCCTATTCAGACTCGCTTTCGCTTGGGCT-CCGGATATAACTCCTTAACC 90541 Query 373 TCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTAC 431 || ||| | | || |||| |||||||||||||| |||||||| |||| | || Sbjct 90540 CTGC--CACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAT--TAT 90485 Query 432 CTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTC 491 | |||| || | |||| || | ||||||| || || |||||||| Sbjct 90484 C---------------CTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTC 90440 Query 492 CCCGCCA-GGGGTACT-TTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| || ||||| || |||||||||||| || | |||||| | | ||||||||||| | Sbjct 90439 CCCGACAGGGGGTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCA 90380 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| |||| |||||||| | |||||||||| ||| || Sbjct 90379 GGAGTATTTAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTCCA 90330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817575135232