Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1022 190 5e-46 seq21 190 5e-46 >seq1022 Length=134933 Score = 190 bits (210), Expect = 5e-46 Identities = 305/418 (73%), Gaps = 25/418 (6%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| |||| | ||||||||| ||||||||||||||| | || || |||| Sbjct 133835 CACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGGT-GTTA 133779 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| ||| ||||||| |||| | |||||| || | || |||||| || || | Sbjct 133778 CCCAAGCTT-CAACCTGGCCAT-GATTAGATCATCCAGGTT-CGGGTCCATAAGA-AGTG 133723 Query 130 ACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC-TAT---TCGGTTAAGC 184 ||| | ||||||| | ||||||||||| |||| | |||| ||| || |||| | Sbjct 133722 ACTGTATCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATATAACTCC-TTAACC 133665 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | |||||| ||||||||| | | |||| | ||| ||| |||| |||| | Sbjct 133664 CT-GCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG-------A 133613 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||||||||||||| || |||||||||| | ||| ||||||||||| ||| Sbjct 133612 TTATCCTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTCCCCGACAGGGG 133553 Query 305 GTTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||| |||| ||||||| || | ||||| |||||||||||||| |||| ||||||||| Sbjct 133552 GTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCAGGAGTATTTAG 133493 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||| |||||| | | ||||| || || | |||| || | ||||||| Sbjct 133492 CCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 133436 >seq21 Length=95773 Score = 190 bits (210), Expect = 5e-46 Identities = 305/418 (73%), Gaps = 25/418 (6%) Strand=Plus/Plus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| |||| | ||||||||| ||||||||||||||| | || || |||| Sbjct 5142 CACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGGT-GTTA 5198 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| ||| ||||||| |||| | |||||| || | || |||||| || || | Sbjct 5199 CCCAAGCTT-CAACCTGGCCAT-GATTAGATCATCCAGGTT-CGGGTCCATAAGA-AGTG 5254 Query 130 ACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC-TAT---TCGGTTAAGC 184 ||| | ||||||| | ||||||||||| |||| | |||| ||| || |||| | Sbjct 5255 ACTGTATCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATATAACTCC-TTAACC 5312 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | |||||| ||||||||| | | |||| | ||| ||| |||| |||| | Sbjct 5313 CT-GCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG-------A 5364 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||||||||||||| || |||||||||| | ||| ||||||||||| ||| Sbjct 5365 TTATCCTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTCCCCGACAGGGG 5424 Query 305 GTTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||| |||| ||||||| || | ||||| |||||||||||||| |||| ||||||||| Sbjct 5425 GTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCAGGAGTATTTAG 5484 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||| |||||| | | ||||| || || | |||| || | ||||||| Sbjct 5485 CCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 5541 Score = 190 bits (210), Expect = 5e-46 Identities = 305/418 (73%), Gaps = 25/418 (6%) Strand=Plus/Minus Query 10 CACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTA 69 ||||| |||| |||| | ||||||||| ||||||||||||||| | || || |||| Sbjct 90711 CACAGCTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGTCCTCGACTTGGT-GTTA 90655 Query 70 CCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGCG 129 ||||| ||| ||||||| |||| | |||||| || | || |||||| || || | Sbjct 90654 CCCAAGCTT-CAACCTGGCCAT-GATTAGATCATCCAGGTT-CGGGTCCATAAGA-AGTG 90599 Query 130 ACTAGA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCC-TAT---TCGGTTAAGC 184 ||| | ||||||| | ||||||||||| |||| | |||| ||| || |||| | Sbjct 90598 ACTGTATCGCCCTATTCAGACTCGCTTT-CGCTTGGGCTCCGGATATAACTCC-TTAACC 90541 Query 185 TTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAA 244 | |||||| ||||||||| | | |||| | ||| ||| |||| |||| | Sbjct 90540 CT-GCCACTTCCTATAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG-------A 90489 Query 245 GTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG 304 | |||||||||||||| || |||||||||| | ||| ||||||||||| ||| Sbjct 90488 TTATCCTCCCACTGCTTGTCAGCTTACGGTTTCATGTTCTCTTTCACTCCCCGACAGGGG 90429 Query 305 GTTCT-TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||||| |||| ||||||| || | ||||| |||||||||||||| |||| ||||||||| Sbjct 90428 GTTCTATTTCACCTTTCCATCGCTGTACTTCTTCACTATCGGTCACTCAGGAGTATTTAG 90369 Query 364 CCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||| |||||| | | ||||| || || | |||| || | ||||||| Sbjct 90368 CCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 90312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241583014912