Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1022 197 3e-48 seq21 197 3e-48 >seq1022 Length=134933 Score = 197 bits (218), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||||| || || ||||||||||||||||||||||||||| Sbjct 130909 GCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 130850 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 130849 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 130790 Query 127 CTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||||| ||| ||| | ||||||||| |||||| | ||| |||| ||| | || Sbjct 130789 CTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGC--- 130733 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | | || | || ||||| | ||||||| ||||||||| ||||| Sbjct 130732 -AGTTTTCACTTTTAG---------CTCCTCAG-CATTATGGGGTATTAGCAGCAGTTTC 130684 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||||| || | | ||||| | ||| || ||| |||||||||||||||||||| Sbjct 130683 CCGCTGTTATCCCCCACCAAAAGGTAAGTT-CTTACGCATTACTCACCCGTCCGCCACT 130626 >seq21 Length=95773 Score = 197 bits (218), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 16/299 (5%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||||| || || ||||||||||||||||||||||||||| Sbjct 8068 GCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 8127 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 8128 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 8187 Query 127 CTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||||| ||| ||| | ||||||||| |||||| | ||| |||| ||| | || Sbjct 8188 CTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGC--- 8244 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | | || | || ||||| | ||||||| ||||||||| ||||| Sbjct 8245 -AGTTTTCACTTTTAG---------CTCCTCAG-CATTATGGGGTATTAGCAGCAGTTTC 8293 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||||| || | | ||||| | ||| || ||| |||||||||||||||||||| Sbjct 8294 CCGCTGTTATCCCCCACCAAAAGGTAAGTT-CTTACGCATTACTCACCCGTCCGCCACT 8351 Score = 197 bits (218), Expect = 3e-48 Identities = 225/299 (75%), Gaps = 16/299 (5%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| ||||||| |||| ||||||||| || || ||||||||||||||||||||||||||| Sbjct 87785 GCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCT 87726 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || ||||| |||||||| Sbjct 87725 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGATCGTCGC 87666 Query 127 CTTGGTGGGCTATTA-TCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGAT 185 ||||| ||| ||| | ||||||||| |||||| | ||| |||| ||| | || Sbjct 87665 CTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTCTCTCTTGGC--- 87609 Query 186 AAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTC 245 | | || | || ||||| | ||||||| ||||||||| ||||| Sbjct 87608 -AGTTTTCACTTTTAG---------CTCCTCAG-CATTATGGGGTATTAGCAGCAGTTTC 87560 Query 246 CAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 | ||||| || | | ||||| | ||| || ||| |||||||||||||||||||| Sbjct 87559 CCGCTGTTATCCCCCACCAAAAGGTAAGTT-CTTACGCATTACTCACCCGTCCGCCACT 87502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998386341888