Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1022 107 2e-21 seq21 107 2e-21 >seq1022 Length=134933 Score = 107 bits (118), Expect = 2e-21 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||| | ||| | | || || || | ||| ||| ||||||||| Sbjct 131803 CGAGTTGCAGCCTACAATCTGAACTGAGGCTAAGTTTGCTAG-ATTCGCTTCCCCTCGCG 131745 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || ||| ||| | ||||||||| ||| ||| ||||| |||||| || Sbjct 131744 GGTTCGCTGCCTATTGTCTTAGCCATTGTATTACGCGTGTAGCCCAGGATGTAAGGGGCA 131685 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || ||||||||||||||| | |||||||||||||| Sbjct 131684 TGCTGACTTGACGTCATCCTCTCCTTCCTCCGGTTT 131649 >seq21 Length=95773 Score = 107 bits (118), Expect = 2e-21 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||| | ||| | | || || || | ||| ||| ||||||||| Sbjct 7174 CGAGTTGCAGCCTACAATCTGAACTGAGGCTAAGTTTGCTAG-ATTCGCTTCCCCTCGCG 7232 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || ||| ||| | ||||||||| ||| ||| ||||| |||||| || Sbjct 7233 GGTTCGCTGCCTATTGTCTTAGCCATTGTATTACGCGTGTAGCCCAGGATGTAAGGGGCA 7292 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || ||||||||||||||| | |||||||||||||| Sbjct 7293 TGCTGACTTGACGTCATCCTCTCCTTCCTCCGGTTT 7328 Score = 107 bits (118), Expect = 2e-21 Identities = 119/156 (76%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACT-ACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||| |||||||| | ||| | | || || || | ||| ||| ||||||||| Sbjct 88679 CGAGTTGCAGCCTACAATCTGAACTGAGGCTAAGTTTGCTAG-ATTCGCTTCCCCTCGCG 88621 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 |||| || ||| ||| | ||||||||| ||| ||| ||||| |||||| || Sbjct 88620 GGTTCGCTGCCTATTGTCTTAGCCATTGTATTACGCGTGTAGCCCAGGATGTAAGGGGCA 88561 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 || ||||||||||||||| | |||||||||||||| Sbjct 88560 TGCTGACTTGACGTCATCCTCTCCTTCCTCCGGTTT 88525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994486960