Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1022 174 3e-41 seq21 174 3e-41 >seq1022 Length=134933 Score = 174 bits (192), Expect = 3e-41 Identities = 207/277 (75%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| ||||||||| | |||| | ||| |||||||||||||||| ||| ||| |||| Sbjct 131252 CTCAGTGTCAGTTACGGCCCAGTAGAGCGCTTTCGCCACTGGTGTTCTTCCTTATCTCTA 131193 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| |||||||| | || || | | ||||||| ||| Sbjct 131192 TGCATTTCACCGCTAAACAAGGAATTCCCTCTACCCCTACCGTACTCAAGTCTCTAAGTA 131133 Query 136 -TCAAATGCA-GGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCT 193 |||| ||| ||| | | |||||| | | ||| ||| |||||| || ||| Sbjct 131132 CTCAACTGCTTGGCCAAAG-TTGAGCTCTGGGATTTAACAGTTGACTTTAGAAACCACCT 131074 Query 194 ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCT 253 ||| |||||| |||||| | |||||| ||||||||| ||| |||||||||||||| Sbjct 131073 ACAGATGCTTTACGCCCAATCATTCCGGACAACGCTTGCACCCTCTGTATTACCGCGGCT 131014 Query 254 GCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||||| |||||||||| | ||| Sbjct 131013 GCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTA 130977 >seq21 Length=95773 Score = 174 bits (192), Expect = 3e-41 Identities = 207/277 (75%), Gaps = 3/277 (1%) Strand=Plus/Plus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| ||||||||| | |||| | ||| |||||||||||||||| ||| ||| |||| Sbjct 7725 CTCAGTGTCAGTTACGGCCCAGTAGAGCGCTTTCGCCACTGGTGTTCTTCCTTATCTCTA 7784 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| |||||||| | || || | | ||||||| ||| Sbjct 7785 TGCATTTCACCGCTAAACAAGGAATTCCCTCTACCCCTACCGTACTCAAGTCTCTAAGTA 7844 Query 136 -TCAAATGCA-GGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCT 193 |||| ||| ||| | | |||||| | | ||| ||| |||||| || ||| Sbjct 7845 CTCAACTGCTTGGCCAAAG-TTGAGCTCTGGGATTTAACAGTTGACTTTAGAAACCACCT 7903 Query 194 ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCT 253 ||| |||||| |||||| | |||||| ||||||||| ||| |||||||||||||| Sbjct 7904 ACAGATGCTTTACGCCCAATCATTCCGGACAACGCTTGCACCCTCTGTATTACCGCGGCT 7963 Query 254 GCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||||| |||||||||| | ||| Sbjct 7964 GCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTA 8000 Score = 174 bits (192), Expect = 3e-41 Identities = 207/277 (75%), Gaps = 3/277 (1%) Strand=Plus/Minus Query 16 CTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCGTATATCTA 75 ||||| ||||||||| | |||| | ||| |||||||||||||||| ||| ||| |||| Sbjct 88128 CTCAGTGTCAGTTACGGCCCAGTAGAGCGCTTTCGCCACTGGTGTTCTTCCTTATCTCTA 88069 Query 76 CGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAAAAACAGTT 135 |||||||||||||| ||| |||||||| | || || | | ||||||| ||| Sbjct 88068 TGCATTTCACCGCTAAACAAGGAATTCCCTCTACCCCTACCGTACTCAAGTCTCTAAGTA 88009 Query 136 -TCAAATGCA-GGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCTTCCCGCCT 193 |||| ||| ||| | | |||||| | | ||| ||| |||||| || ||| Sbjct 88008 CTCAACTGCTTGGCCAAAG-TTGAGCTCTGGGATTTAACAGTTGACTTTAGAAACCACCT 87950 Query 194 ACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGGCT 253 ||| |||||| |||||| | |||||| ||||||||| ||| |||||||||||||| Sbjct 87949 ACAGATGCTTTACGCCCAATCATTCCGGACAACGCTTGCACCCTCTGTATTACCGCGGCT 87890 Query 254 GCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 |||||||| ||||||||| |||||||||| | ||| Sbjct 87889 GCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTA 87853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828789016328