Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq21 141 1e-31 seq616 98.7 2e-18 >seq21 Length=95773 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| Sbjct 2284 ACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 2343 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || |||||||||||| Sbjct 2344 ACTACAGCCCCAGGATGTGATGAGCCGACATCG 2376 Score = 141 bits (156), Expect = 1e-31 Identities = 87/93 (94%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || |||||||||||||||||||||||||||||||||| Sbjct 93568 ACGTTCTGAACCCAGCTCACGTACCACTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 93509 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||||||||||| || |||||||||||| Sbjct 93508 ACTACAGCCCCAGGATGTGATGAGCCGACATCG 93476 >seq616 Length=69036 Score = 98.7 bits (108), Expect = 2e-18 Identities = 189/272 (69%), Gaps = 14/272 (5%) Strand=Plus/Minus Query 11 TTCGGGCTTA-GATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCAC 69 ||| |||||| ||||| |||||| | || || || |||||||| | |||| ||||| Sbjct 61740 TTCTGGCTTAAGATGCTTTCAGC-CATACTGTTTGCACACTTAGCTGCTCAGCAATGCAT 61682 Query 70 TTGGCAG--TACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAA--- 124 || | |||||||| | ||||||||| ||| | | | |||||| ||||||||| Sbjct 61681 TTTTAAAAATACAACTGATATACCAGAGGTGTGTACTTTCAGGTCCTTTCGTACTAAAAA 61622 Query 125 GGACAGCTC-CTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGA 183 | | | | || || || || ||| || || | | ||| |||| || | | Sbjct 61621 GTATATGTAACTGTCTAAAAAACT--GCC----ACAGAGAAGAGCCGTGCTGTGTCACCA 61568 Query 184 CGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTA 243 || ||||||||||||| ||| || |||||| | ||||||| | ||||||| |||| Sbjct 61567 CGCACTGAACCCAGCTCACGTACCGTTTTAATCGACGAACAGTCGAACCCTTCTTACCTT 61508 Query 244 CTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| |||| || |||||||||||| Sbjct 61507 CTGCAGCAAGAGGACACGATGAGCCGACATCG 61476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780789652448