Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq707 91.5 2e-16 seq324 75.2 2e-11 >seq707 Length=132905 Score = 91.5 bits (100), Expect = 2e-16 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 88 TGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGCTTCATGCGT 147 ||||||| || | ||| ||| | | | || | ||||| ||||||| |||||||||| Sbjct 12798 TGAGCACGGCCATGAATGCTGCCT-GAGGCACCTCCACCTTGCCCAGCTGCTTCATGCGC 12856 Query 148 TTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAG 207 || || ||| | ||||||| |||||||| ||| ||||| | ||| ||||||||| Sbjct 12857 TTCTTGCCGTCAGCCTGCTTCTGCAGCAGCTTCTTCTTGCGGCTGATGTCGCCGCCGTAG 12916 Query 208 CATTTGGCCAGTACGTTCTT 227 || |||||||| |||| ||| Sbjct 12917 CACTTGGCCAGCACGTCCTT 12936 >seq324 Length=299389 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 145 CGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCACCGCCG 204 || || || || |||| ||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 40172 CGCTTCTTGCCCTCCTTCTGCTTCTGCAGCAGCTTGCGCTTGCGGCTGACGTCGCCGCCG 40231 Query 205 TAGCATTTGGC 215 ||||| ||||| Sbjct 40232 TAGCACTTGGC 40242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 838388530688