Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1022 239 1e-60 seq21 239 1e-60 >seq1022 Length=134933 Score = 239 bits (264), Expect = 1e-60 Identities = 293/394 (74%), Gaps = 32/394 (8%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||||| || ||| |||||||||| ||||||||||| || ||||||||||||||||||| Sbjct 130920 CACGCGGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCC 130861 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 130860 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 130801 Query 151 GGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA-TCTGGGTTCA 208 ||||||||||| || |||| ||| |||| |||||||||||||| | | | || Sbjct 130800 CTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC- 130742 Query 209 TCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAG 268 || | || | || | | || || | || | | | ||||| |||||||| Sbjct 130741 TC---TCTTG--------GCAGTTTTCACTTTTAGCTCCT-CAGCATTATGGGGTATTAG 130694 Query 269 CCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGT 328 | | |||||| | |||||||||| ||| ||| | ||| | |||||||||||||| Sbjct 130693 CAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCGT 130634 Query 329 CCGCCACT--------CGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| | | |||| | ||| | | || ||| |||||||| Sbjct 130633 CCGCCACTGCAATCTACCTTTCCGAA--AAAAAGTAGAT--CT-----CGTACGACTTGC 130583 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||| | |||||||||||| ||||| Sbjct 130582 ATGTGTTAGGCATACCGCCAGCGTTCGTCCTGAG 130549 >seq21 Length=95773 Score = 239 bits (264), Expect = 1e-60 Identities = 293/394 (74%), Gaps = 32/394 (8%) Strand=Plus/Plus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||||| || ||| |||||||||| ||||||||||| || ||||||||||||||||||| Sbjct 8057 CACGCGGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCC 8116 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 8117 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 8176 Query 151 GGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA-TCTGGGTTCA 208 ||||||||||| || |||| ||| |||| |||||||||||||| | | | || Sbjct 8177 CTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC- 8235 Query 209 TCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAG 268 || | || | || | | || || | || | | | ||||| |||||||| Sbjct 8236 TC---TCTTG--------GCAGTTTTCACTTTTAGCTCCT-CAGCATTATGGGGTATTAG 8283 Query 269 CCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGT 328 | | |||||| | |||||||||| ||| ||| | ||| | |||||||||||||| Sbjct 8284 CAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCGT 8343 Query 329 CCGCCACT--------CGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| | | |||| | ||| | | || ||| |||||||| Sbjct 8344 CCGCCACTGCAATCTACCTTTCCGAA--AAAAAGTAGAT--CT-----CGTACGACTTGC 8394 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||| | |||||||||||| ||||| Sbjct 8395 ATGTGTTAGGCATACCGCCAGCGTTCGTCCTGAG 8428 Score = 239 bits (264), Expect = 1e-60 Identities = 293/394 (74%), Gaps = 32/394 (8%) Strand=Plus/Minus Query 31 CACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCC 90 ||||||| || ||| |||||||||| ||||||||||| || ||||||||||||||||||| Sbjct 87796 CACGCGGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCC 87737 Query 91 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTA 150 ||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||| Sbjct 87736 CGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTA 87677 Query 151 GGGATCGTCGCCTAGGTGGGCCATTA-CCCCGCCAACTAGCTAATCCCA-TCTGGGTTCA 208 ||||||||||| || |||| ||| |||| |||||||||||||| | | | || Sbjct 87676 CTGATCGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCAAGCCTC- 87618 Query 209 TCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGCGACGTTATGCGGTATTAG 268 || | || | || | | || || | || | | | ||||| |||||||| Sbjct 87617 TC---TCTTG--------GCAGTTTTCACTTTTAGCTCCT-CAGCATTATGGGGTATTAG 87570 Query 269 CCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACTCACCCGT 328 | | |||||| | |||||||||| ||| ||| | ||| | |||||||||||||| Sbjct 87569 CAGCAGTTTCCCGCTGTTATCCCCCACCAAAAGGTAAGTTCTTACGCATTACTCACCCGT 87510 Query 329 CCGCCACT--------CGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 |||||||| | | |||| | ||| | | || ||| |||||||| Sbjct 87509 CCGCCACTGCAATCTACCTTTCCGAA--AAAAAGTAGAT--CT-----CGTACGACTTGC 87459 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||||||||| | |||||||||||| ||||| Sbjct 87458 ATGTGTTAGGCATACCGCCAGCGTTCGTCCTGAG 87425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222383277568