Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1022 360 6e-97 seq21 360 6e-97 >seq1022 Length=134933 Score = 360 bits (398), Expect = 6e-97 Identities = 291/345 (84%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||| ||| | |||||||||||||||||||| | Sbjct 130749 GCGTCTGATTAGCTAGTTGGTGGGGGTAAAGGCCTCCCAAGGCGACGATCAGTAGCTGGT 130808 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 130809 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 130868 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| ||||||||||| ||||| ||||||||| ||||| Sbjct 130869 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAATACCGCGTGAGGGATGA 130928 Query 340 AGGCCTTCG-GGT-CGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | ||| ||| ||||| |||| | || |||||||| ||||||||||||| |||| Sbjct 130929 AG--CATCGTGGTGTGTAAACCTCTTTTCTTAAGGAAGAATCAATGACGGTACTTAAGGA 130986 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| || Sbjct 130987 ATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTC 131046 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| | ||||||||||||| ||||| Sbjct 131047 CGGAATGA-TTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTC 131090 >seq21 Length=95773 Score = 360 bits (398), Expect = 6e-97 Identities = 291/345 (84%), Gaps = 8/345 (2%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||| ||| | |||||||||||||||||||| | Sbjct 8228 GCGTCTGATTAGCTAGTTGGTGGGGGTAAAGGCCTCCCAAGGCGACGATCAGTAGCTGGT 8169 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 8168 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 8109 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| ||||||||||| ||||| ||||||||| ||||| Sbjct 8108 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAATACCGCGTGAGGGATGA 8049 Query 340 AGGCCTTCG-GGT-CGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | ||| ||| ||||| |||| | || |||||||| ||||||||||||| |||| Sbjct 8048 AG--CATCGTGGTGTGTAAACCTCTTTTCTTAAGGAAGAATCAATGACGGTACTTAAGGA 7991 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| || Sbjct 7990 ATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTC 7931 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| | ||||||||||||| ||||| Sbjct 7930 CGGAATGA-TTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTC 7887 Score = 360 bits (398), Expect = 6e-97 Identities = 291/345 (84%), Gaps = 8/345 (2%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGG-TAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||||||||||||| || ||| ||| | |||||||||||||||||||| | Sbjct 87625 GCGTCTGATTAGCTAGTTGGTGGGGGTAAAGGCCTCCCAAGGCGACGATCAGTAGCTGGT 87684 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||| Sbjct 87685 CTGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 87744 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| ||||||||||| ||||| ||||||||| ||||| Sbjct 87745 CAGTGGGGAATTTTCCACAATGGGCGAAAGCCTGATGGAGCAATACCGCGTGAGGGATGA 87804 Query 340 AGGCCTTCG-GGT-CGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGA 395 || | ||| ||| ||||| |||| | || |||||||| ||||||||||||| |||| Sbjct 87805 AG--CATCGTGGTGTGTAAACCTCTTTTCTTAAGGAAGAATCAATGACGGTACTTAAGGA 87862 Query 396 GGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATC 455 |||| |||||||||| |||||||||||||||||||||| |||| || |||||| || Sbjct 87863 ATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTC 87922 Query 456 CGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 |||||| | | |||||||||| | ||||||||||||| ||||| Sbjct 87923 CGGAATGA-TTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTC 87966 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497579512832