Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1022 273 5e-71 seq21 273 5e-71 >seq1022 Length=134933 Score = 273 bits (302), Expect = 5e-71 Identities = 307/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| |||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 130977 TACTTAAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 131036 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||| | ||||||||||| | ||||||||||||| |||||| || Sbjct 131037 AAGCGTTGTCCGGAATGATTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTCAACTGT 131096 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | ||||||| || || |||| ||| | || |||| | | || Sbjct 131097 TAAATCCCAGAGCTCAACTTTGGCCAAGCAGTTGAGTACTTAGAGACTTGAGTACGGTAG 131156 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | ||||||||| || |||||||||||||| |||| || |||| ||||||||||| Sbjct 131157 GGGTAGAGGGAATTCCTTGTTTAGCGGTGAAATGCATAGAGATAAGGAAGAACACCAGTG 131216 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||| ||| | |||| | ||||||||||||||| ||||| ||||||| || | Sbjct 131217 GCGAAAGCGCTCTACTGGGCCGTAACTGACACTGAGAGATGAAAGTTAGGGGAGCGAAAA 131276 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 |||||||||||||| ||||||| | |||||||||| |||||| ||| | || | Sbjct 131277 GGATTAGATACCCTTGTAGTCCTAACTGTAAACGATGGATACTAAGTGCTG----TCAAA 131332 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 131333 A-----ACAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 131376 >seq21 Length=95773 Score = 273 bits (302), Expect = 5e-71 Identities = 307/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Minus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| |||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 8000 TACTTAAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 7941 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||| | ||||||||||| | ||||||||||||| |||||| || Sbjct 7940 AAGCGTTGTCCGGAATGATTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTCAACTGT 7881 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | ||||||| || || |||| ||| | || |||| | | || Sbjct 7880 TAAATCCCAGAGCTCAACTTTGGCCAAGCAGTTGAGTACTTAGAGACTTGAGTACGGTAG 7821 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | ||||||||| || |||||||||||||| |||| || |||| ||||||||||| Sbjct 7820 GGGTAGAGGGAATTCCTTGTTTAGCGGTGAAATGCATAGAGATAAGGAAGAACACCAGTG 7761 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||| ||| | |||| | ||||||||||||||| ||||| ||||||| || | Sbjct 7760 GCGAAAGCGCTCTACTGGGCCGTAACTGACACTGAGAGATGAAAGTTAGGGGAGCGAAAA 7701 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 |||||||||||||| ||||||| | |||||||||| |||||| ||| | || | Sbjct 7700 GGATTAGATACCCTTGTAGTCCTAACTGTAAACGATGGATACTAAGTGCTG----TCAAA 7645 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 7644 A-----ACAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 7601 Score = 273 bits (302), Expect = 5e-71 Identities = 307/409 (75%), Gaps = 10/409 (2%) Strand=Plus/Plus Query 1 TACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||||| |||| |||| |||||||||| |||||||||||||||||||||| |||| || Sbjct 87853 TACTTAAGGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGC 87912 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGT 120 |||||| |||||||| | ||||||||||| | ||||||||||||| |||||| || Sbjct 87913 AAGCGTTGTCCGGAATGATTGGGCGTAAAGCATCTGTAGGTGGTTTCTAAAGTCAACTGT 87972 Query 121 GAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAA-ACTGCAGGGCTAGAGTGCAGGAG 179 ||| | | ||||||| || || |||| ||| | || |||| | | || Sbjct 87973 TAAATCCCAGAGCTCAACTTTGGCCAAGCAGTTGAGTACTTAGAGACTTGAGTACGGTAG 88032 Query 180 GGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTG 239 ||| | ||||||||| || |||||||||||||| |||| || |||| ||||||||||| Sbjct 88033 GGGTAGAGGGAATTCCTTGTTTAGCGGTGAAATGCATAGAGATAAGGAAGAACACCAGTG 88092 Query 240 GCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 ||||| ||| | |||| | ||||||||||||||| ||||| ||||||| || | Sbjct 88093 GCGAAAGCGCTCTACTGGGCCGTAACTGACACTGAGAGATGAAAGTTAGGGGAGCGAAAA 88152 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATA 359 |||||||||||||| ||||||| | |||||||||| |||||| ||| | || | Sbjct 88153 GGATTAGATACCCTTGTAGTCCTAACTGTAAACGATGGATACTAAGTGCTG----TCAAA 88208 Query 360 AGTGCTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | |||| | ||| ||||| ||||||| || ||||||||||| Sbjct 88209 A-----ACAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 88252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203183540224