Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1023 410 2e-112 seq1010 313 5e-83 >seq1023 Length=7928 Score = 410 bits (454), Expect = 2e-112 Identities = 280/311 (90%), Gaps = 3/311 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| || ||| |||||||| || || | |||||||| Sbjct 4727 GAACGAGACCTTAACCTGCTAAATAGACATGCCGGCTTTGGCTGGCAGCTGTCTTCTTAG 4786 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| | ||| | |||| | |||||||||||||||||||||||||||||||||||| Sbjct 4787 AGGGACTTTTGGCGTTTAGCCAAAGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 4846 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||| |||||||| || Sbjct 4847 AGATGTTCTGGGCCGCACGCGCGCTACACTGACTGAGCCAGCGAGTTTATCACCTTAGCT 4906 Query 199 G-GAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 | |||| | ||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4907 GAGAAGCT-TGGGTAATCTTGTGAAACTCAGTCGTGCTGGGGATAGAGCATTGCAATTAT 4965 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 |||||||||||||||||| ||||||||||| | |||| |||| ||||||||||||||||| Sbjct 4966 TGCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCACCAGCTCGCGTTGATTACGTCCC 5025 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 5026 TGCCCTTTGTA 5036 >seq1010 Length=4219 Score = 313 bits (346), Expect = 5e-83 Identities = 259/311 (83%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTG-GCGGGTCGCCGGCTTCTTA 78 || |||||||| | |||||||||||| | ||||| || | | || | ||||||| Sbjct 894 GAACGAGACCTCAGCCTGCTAAATAGTCTCAGTTGCTTTTTGCAGCTGGCTGACTTCTTA 953 Query 79 GAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCT 137 |||||||||| ||| | || | |||||||| |||||||||||||||||||||||||||| Sbjct 954 GAGGGACTATTGGCGTTTAGTCAATGGAAGTATGAGGCAATAACAGGTCTGTGATGCCCT 1013 Query 138 TAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGC 197 ||||||||||||||||||||||||||||||||| | |||| || ||| |||| | Sbjct 1014 TAGATGTTCTGGGCCGCACGCGCGCTACACTGATGCATTCAACAAGCCTATC--CTTGAC 1071 Query 198 CGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTAT 257 || | ||||||||||||||| | ||||| ||||| |||||||||| ||||||||||| Sbjct 1072 CGAAGGGTCTGGGTAATCTT-TGAAACTGCATCGTGATGGGGATAGATTATTGCAATTAT 1130 Query 258 TGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCC 317 | |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 1131 TAGTCTTCAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCC 1190 Query 318 TGCCCTTTGTA 328 ||||||||||| Sbjct 1191 TGCCCTTTGTA 1201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947187042304