Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq1022 196 2e-47 seq21 196 2e-47 >seq1022 Length=134933 Score = 196 bits (216), Expect = 2e-47 Identities = 377/544 (69%), Gaps = 18/544 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||| || | | |||||||| | ||||||| || Sbjct 133699 CGAGTCTGAATAGGGCGATACAGTCACTTCTTATGGACCCGAACCTGGATGATCTAATCA 133758 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| | |||||||| | |||| ||||||| || ||||||||||| Sbjct 133759 TGGCCAGGTTGAAGCTTGGGTAACACCAAGTCGAGGACCGAACCGACCGATGTTGAAAAA 133818 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | | |||||||||||| ||||||||||| | || | || | || ||||||| ||| Sbjct 133819 TCGGCGGATGAGCTGTGATTAGGGGTGAAATTCCAATCGAATTCAGAGCTAGCTGGATCT 133878 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC-ATC-GGGGGTAGAGC-ACTGTT 236 | |||||| || ||| || ||| || || || ||||||||| |||||| Sbjct 133879 CCCCGAAATGCGTTGAGGCGCAGCGGCAACGATGTCCTGTCTAAGGGTAGAGCGACTGTT 133938 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAA---TGCGCATCA 292 || ||| | | ||| |||||| | | |||||||||||| | ||| Sbjct 133939 TCGGTGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCCGAATATTAGGCAAAG 133996 Query 293 GTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAAT 350 | || ||| | |||||| |||| | |||| | | | | ||||| || | Sbjct 133997 GATT--CCGTAAGCCAGTGAGACTGTGGGAGATAAGTTTCATAGTCAAGAGGGAAACAGC 134054 Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 || ||| ||||||||||||||| |||||| ||||||| || || || || || ||| Sbjct 134055 CCAGACCATCAGCTAAGGCCCCAAAATGATTGCTAAGTGGAA--AAGGATGTGAGAATGC 134112 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 | | ||| | |||| ||| |||| |||||||| |||| || ||||||||||||| ||||| Sbjct 134113 TGAAACAACCAGGAGGTTCGCTTAGAAGCAGCTATTCCTTGAAAGAGTGCGTAATAGCTC 134172 Query 471 ACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||| || || || ||| || ||| |||| | |||| ||| ||||||| || Sbjct 134173 ACTGGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGCAATCTGCCGAAGCTATG 134231 Query 531 GGAT 534 |||| Sbjct 134232 GGAT 134235 >seq21 Length=95773 Score = 196 bits (216), Expect = 2e-47 Identities = 377/544 (69%), Gaps = 18/544 (3%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||| || | | |||||||| | ||||||| || Sbjct 5278 CGAGTCTGAATAGGGCGATACAGTCACTTCTTATGGACCCGAACCTGGATGATCTAATCA 5219 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| | |||||||| | |||| ||||||| || ||||||||||| Sbjct 5218 TGGCCAGGTTGAAGCTTGGGTAACACCAAGTCGAGGACCGAACCGACCGATGTTGAAAAA 5159 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | | |||||||||||| ||||||||||| | || | || | || ||||||| ||| Sbjct 5158 TCGGCGGATGAGCTGTGATTAGGGGTGAAATTCCAATCGAATTCAGAGCTAGCTGGATCT 5099 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC-ATC-GGGGGTAGAGC-ACTGTT 236 | |||||| || ||| || ||| || || || ||||||||| |||||| Sbjct 5098 CCCCGAAATGCGTTGAGGCGCAGCGGCAACGATGTCCTGTCTAAGGGTAGAGCGACTGTT 5039 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAA---TGCGCATCA 292 || ||| | | ||| |||||| | | |||||||||||| | ||| Sbjct 5038 TCGGTGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCCGAATATTAGGCAAAG 4981 Query 293 GTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAAT 350 | || ||| | |||||| |||| | |||| | | | | ||||| || | Sbjct 4980 GATT--CCGTAAGCCAGTGAGACTGTGGGAGATAAGTTTCATAGTCAAGAGGGAAACAGC 4923 Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 || ||| ||||||||||||||| |||||| ||||||| || || || || || ||| Sbjct 4922 CCAGACCATCAGCTAAGGCCCCAAAATGATTGCTAAGTGGAA--AAGGATGTGAGAATGC 4865 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 | | ||| | |||| ||| |||| |||||||| |||| || ||||||||||||| ||||| Sbjct 4864 TGAAACAACCAGGAGGTTCGCTTAGAAGCAGCTATTCCTTGAAAGAGTGCGTAATAGCTC 4805 Query 471 ACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||| || || || ||| || ||| |||| | |||| ||| ||||||| || Sbjct 4804 ACTGGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGCAATCTGCCGAAGCTATG 4746 Query 531 GGAT 534 |||| Sbjct 4745 GGAT 4742 Score = 196 bits (216), Expect = 2e-47 Identities = 377/544 (69%), Gaps = 18/544 (3%) Strand=Plus/Plus Query 2 CGAGTCCGAACAGGGCGA--CAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCA 59 |||||| ||| ||||||| ||||| || | | |||||||| | ||||||| || Sbjct 90575 CGAGTCTGAATAGGGCGATACAGTCACTTCTTATGGACCCGAACCTGGATGATCTAATCA 90634 Query 60 TGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAA 119 |||||||| ||||| | |||||||| | |||| ||||||| || ||||||||||| Sbjct 90635 TGGCCAGGTTGAAGCTTGGGTAACACCAAGTCGAGGACCGAACCGACCGATGTTGAAAAA 90694 Query 120 TTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCT 179 | | |||||||||||| ||||||||||| | || | || | || ||||||| ||| Sbjct 90695 TCGGCGGATGAGCTGTGATTAGGGGTGAAATTCCAATCGAATTCAGAGCTAGCTGGATCT 90754 Query 180 CTCCGAAAACTATTTAGGTAGTGCCTCAAGTATCACC-ATC-GGGGGTAGAGC-ACTGTT 236 | |||||| || ||| || ||| || || || ||||||||| |||||| Sbjct 90755 CCCCGAAATGCGTTGAGGCGCAGCGGCAACGATGTCCTGTCTAAGGGTAGAGCGACTGTT 90814 Query 237 ATGGCTAGGG-GGTCATTGCGACTTACCAAACCATTGCAAACTCCGAA---TGCGCATCA 292 || ||| | | ||| |||||| | | |||||||||||| | ||| Sbjct 90815 TCGGTGCGGGCTGCGAAAGCG--GTACCAAGTCGTGGCAAACTCCGAATATTAGGCAAAG 90872 Query 293 GTTTTACCG--CGGGAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAAT 350 | || ||| | |||||| |||| | |||| | | | | ||||| || | Sbjct 90873 GATT--CCGTAAGCCAGTGAGACTGTGGGAGATAAGTTTCATAGTCAAGAGGGAAACAGC 90930 Query 351 CCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGC 410 || ||| ||||||||||||||| |||||| ||||||| || || || || || ||| Sbjct 90931 CCAGACCATCAGCTAAGGCCCCAAAATGATTGCTAAGTGGAA--AAGGATGTGAGAATGC 90988 Query 411 TAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTC 470 | | ||| | |||| ||| |||| |||||||| |||| || ||||||||||||| ||||| Sbjct 90989 TGAAACAACCAGGAGGTTCGCTTAGAAGCAGCTATTCCTTGAAAGAGTGCGTAATAGCTC 91048 Query 471 ACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTG 530 ||| || || || ||| || ||| |||| | |||| ||| ||||||| || Sbjct 91049 ACTGGTAAAGCGTTCTTGCGCCGACAATGGCCGGG-ACTAAGCAATCTGCCGAAGCTATG 91107 Query 531 GGAT 534 |||| Sbjct 91108 GGAT 91111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689576886272