Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1022 120 6e-25 seq21 120 6e-25 seq1021 98.7 2e-18 >seq1022 Length=134933 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||||||||| || || | |||||| ||| |||| Sbjct 132988 GGTGGAGACCTAGGCACTCAGAGACGATGAAGGGCGCAGATACCGGCGATACGCTTCGGG 133047 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | || || | | |||||| |||| |||||| ||| |||| ||| | Sbjct 133048 GAGCTGGTAA-CAAGCATCGATCCGAAGATCCCCGAATAGGGCAACCT----CTTAAAGA 133102 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | | ||||| ||||| | | || || ||| ||| |||||||||||||| ||| Sbjct 133103 -ACTCCTTTTTGAATTCATAGAAAAGGAAGAGGCAACCCGGTGAACTGAAACATCTCAGT 133161 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 133162 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGGAGTAGCGGCGAGCGAAATGGGAACAG 133221 Query 249 CCT 251 ||| Sbjct 133222 CCT 133224 >seq21 Length=95773 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 7/243 (3%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||||||||| || || | |||||| ||| |||| Sbjct 5989 GGTGGAGACCTAGGCACTCAGAGACGATGAAGGGCGCAGATACCGGCGATACGCTTCGGG 5930 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | || || | | |||||| |||| |||||| ||| |||| ||| | Sbjct 5929 GAGCTGGTAA-CAAGCATCGATCCGAAGATCCCCGAATAGGGCAACCT----CTTAAAGA 5875 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | | ||||| ||||| | | || || ||| ||| |||||||||||||| ||| Sbjct 5874 -ACTCCTTTTTGAATTCATAGAAAAGGAAGAGGCAACCCGGTGAACTGAAACATCTCAGT 5816 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 5815 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGGAGTAGCGGCGAGCGAAATGGGAACAG 5756 Query 249 CCT 251 ||| Sbjct 5755 CCT 5753 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 7/243 (3%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 |||||| ||| ||| | | || ||||||||| || || | |||||| ||| |||| Sbjct 89864 GGTGGAGACCTAGGCACTCAGAGACGATGAAGGGCGCAGATACCGGCGATACGCTTCGGG 89923 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | || || | | |||||| |||| |||||| ||| |||| ||| | Sbjct 89924 GAGCTGGTAA-CAAGCATCGATCCGAAGATCCCCGAATAGGGCAACCT----CTTAAAGA 89978 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | | | | ||||| ||||| | | || || ||| ||| |||||||||||||| ||| Sbjct 89979 -ACTCCTTTTTGAATTCATAGAAAAGGAAGAGGCAACCCGGTGAACTGAAACATCTCAGT 90037 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||| | ||||||||||| ||| | ||||||| ||||| |||||||||||||||| || Sbjct 90038 AGCCGGAGGAAAAGAAAGCAAAAGCGATTCCCGGAGTAGCGGCGAGCGAAATGGGAACAG 90097 Query 249 CCT 251 ||| Sbjct 90098 CCT 90100 >seq1021 Length=3396 Score = 98.7 bits (108), Expect = 2e-18 Identities = 121/160 (76%), Gaps = 13/160 (8%) Strand=Plus/Plus Query 163 AACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAA 222 ||| | | ||||||||||||||||||| ||| |||||| |||||||||||||| ||| | Sbjct 3246 AACACAGTGAACTGAAACATCTAAGTAACTGTAGGAAAGGAAATCAACCGAGACTCCATA 3305 Query 223 AGTAGTGGCGAGCGAAA-TGG-GATGAGCCTTTACGAGATAGTTGAATTGATAGTGGAAT 280 |||||||| |||||||| ||| || |||| ||| || ||| ||| | |||| Sbjct 3306 AGTAGTGGTGAGCGAAAGTGGAAATTAGCC--------ATAATT-TATTAATATTAGAAT 3356 Query 281 CCTCTGGAAATAGG-AGCCATAG-CGGGTGATAGCCCCGT 318 | | |||||| ||| | || ||| ||||| ||||| || Sbjct 3357 CGTTTGGAAAAAGGAATCCGTAGTAAGGTGAAAGCCCTGT 3396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918387436288