Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1023 764 0.0 seq246 693 0.0 seq1010 194 5e-47 >seq1023 Length=7928 Score = 764 bits (846), Expect = 0.0 Identities = 482/519 (93%), Gaps = 4/519 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || || |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 515 CTTTTGTTCCACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 456 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 455 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 396 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGA 186 ||||| ||||||||||| |||| ||| ||| || || |||||||||||||||||| Sbjct 395 AGCCCGTAAAGGACCTTAAAGCCAAAAAGTGGGACGTTAATCCCAGTTCCGCTTCATTGA 336 Query 187 TTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTTA 246 |||||||||||||||| |||||||||||||||| |||||||| ||||||||||| Sbjct 335 ATAAGTAAAAAAACGATGGAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACTTA 279 Query 247 TTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTC 306 ||||||||| || ||| |||||||| ||| ||||||||||||||||||||||||||| Sbjct 278 TTCTACACCCTCCATGTCTTTTCACAATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTC 219 Query 307 TTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 366 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 218 TTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA 159 Query 367 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATT 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 158 GGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGA-GCATT 100 Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 99 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 40 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 ||||||||||||||||||||||||||||||||||||||| Sbjct 39 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 1 Score = 206 bits (228), Expect = 9e-51 Identities = 116/117 (99%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7928 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 7869 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTTCTG 543 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 7868 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCACTTTCTG 7812 >seq246 Length=36864 Score = 693 bits (768), Expect = 0.0 Identities = 479/536 (89%), Gaps = 12/536 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| |||||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 33247 CTTTTGTTCTACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 33188 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||| Sbjct 33187 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATC 33128 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAA-ATGGTCGGTGAAGACCAGT-TCCGCTTCATT 184 | ||| | | |||| | |||| | |||||| ||||| | ||| | || Sbjct 33127 GCGCCG---AAGCGCTTAGATCTAGAAGCAGGGTCGG---AGACCCGCCTCCAAGTAATG 33074 Query 185 GATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACT 244 || ||||||||| |||| ||| ||||||||||||||||| |||||| ||||||||| Sbjct 33073 GAATAAGTAAAACAACGTTAAAAGTAGTGGTATTTCACTTTTGCCGAA---GCTCCCACT 33017 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 33016 TATTCTACACCTCTTAAGTTATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 32957 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 32956 TCTTTCCCCGCTGTTTTTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 32897 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32896 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 32837 Query 425 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32836 TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTT 32777 Query 485 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 32776 CTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 32722 >seq1010 Length=4219 Score = 194 bits (214), Expect = 5e-47 Identities = 112/114 (98%), Gaps = 1/114 (1%) Strand=Plus/Minus Query 427 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4219 TGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCT 4160 Query 487 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCACTTT 540 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||| Sbjct 4159 TCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACATC-CTTT 4107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635177630464