Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq21 141 3e-31 seq616 84.2 7e-14 seq469 84.2 7e-14 seq72 82.4 3e-13 >seq21 Length=95773 Score = 141 bits (156), Expect = 3e-31 Identities = 307/451 (68%), Gaps = 15/451 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||| ||||| ||| |||||||| |||||| || Sbjct 2511 TCGACTTGTAGGTCTTGCAGTCAAGCCCCCTTTTGCCTTTACACTCGTTGTCTGATTTCC 2570 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||| ||||||| ||||||| ||||| ||| |||| | ||||||||| Sbjct 2571 GTCCAGACTGAGGGGACCTTTGCGCGCCTCAGTTACCCTTTATGAGG-CTTCCGCCCCAG 2629 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGA----TA 175 ||||| |||||| | |||||| || ||| || || || |||| || Sbjct 2630 AAAAACTGCCCACCTGAAACTGTCAAGTGTCCTGATTCAAGGATCACCATTAGGATTCTA 2689 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 || || | |||||||| | ||| | | ||||| | | | | | || Sbjct 2690 GCCTCTCC----AGAGTGGTCTCTCACTGATGGCTCCAACTTCCCCGGAAGGAAATCTTC 2745 Query 236 ATAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 |||| |||||||||| || | ||| | || ||||| ||||| ||| | || ||| | Sbjct 2746 ATAGCCTCCCACCTAGACTGCGCAAGAAAAGC-CCGAAC-CCAATTCCAGGATACAGTCA 2803 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | | ||||||| || | | || Sbjct 2804 AGCTTCATAGGGTCTTTCTGTCCAAGTATTAGTAGTCCGCATCTTCACGGACAAGTCTAT 2863 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| | || | |||||||| || ||||||| ||||||||||||| || Sbjct 2864 TTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATTACGCCTTTCGTGCAGGTCGAAA 2923 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||| |||||| |||||||||||||||||| Sbjct 2924 CTTACTCGACAATGAATTTCGCTACCTTAGG 2954 Score = 141 bits (156), Expect = 3e-31 Identities = 307/451 (68%), Gaps = 15/451 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||| ||||| ||| |||||||| |||||| || Sbjct 93341 TCGACTTGTAGGTCTTGCAGTCAAGCCCCCTTTTGCCTTTACACTCGTTGTCTGATTTCC 93282 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||| ||||||| ||||||| ||||| ||| |||| | ||||||||| Sbjct 93281 GTCCAGACTGAGGGGACCTTTGCGCGCCTCAGTTACCCTTTATGAGG-CTTCCGCCCCAG 93223 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGGGCCAAGGTTAGA----TA 175 ||||| |||||| | |||||| || ||| || || || |||| || Sbjct 93222 AAAAACTGCCCACCTGAAACTGTCAAGTGTCCTGATTCAAGGATCACCATTAGGATTCTA 93163 Query 176 TCCACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATC 235 || || | |||||||| | ||| | | ||||| | | | | | || Sbjct 93162 GCCTCTCC----AGAGTGGTCTCTCACTGATGGCTCCAACTTCCCCGGAAGGAAATCTTC 93107 Query 236 ATAGTCTCCCACCTATCCTACACAA--ACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 |||| |||||||||| || | ||| | || ||||| ||||| ||| | || ||| | Sbjct 93106 ATAGCCTCCCACCTAGACTGCGCAAGAAAAGC-CCGAAC-CCAATTCCAGGATACAGTCA 93049 Query 294 AGGTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || | | |||||||| |||| | | ||||||| || | | || Sbjct 93048 AGCTTCATAGGGTCTTTCTGTCCAAGTATTAGTAGTCCGCATCTTCACGGACAAGTCTAT 92989 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| | || | |||||||| || ||||||| ||||||||||||| || Sbjct 92988 TTCACCGAGTCTCTCTCCGAGACAGCGTTCTGATCATTACGCCTTTCGTGCAGGTCGAAA 92929 Query 413 CTTACCCGACAAGGAATTTCGCTACCTTAGG 443 ||||| |||||| |||||||||||||||||| Sbjct 92928 CTTACTCGACAATGAATTTCGCTACCTTAGG 92898 >seq616 Length=69036 Score = 84.2 bits (92), Expect = 7e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 426 ||| |||||||| | | || ||||||||||| ||| ||||| | ||| |||||||| Sbjct 60957 GGTAGAGACAGCGGATGGGTGATTACGCCATTCATGCGGGTCGACAATTATTCGACAAGG 60898 Query 427 AATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||| | ||| ||||| | |||||| || || ||||| Sbjct 60897 AATTTCGCTACCTTAGAACCCTTAGAGTTAGGGCTGCCGTTCACCGGTCCTTCA 60844 >seq469 Length=76214 Score = 84.2 bits (92), Expect = 7e-14 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 367 GGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGG 426 ||| |||||||| | | || ||||||||||| ||| ||||| | ||| |||||||| Sbjct 75601 GGTAGAGACAGCGGATGGGTGATTACGCCATTCATGCGGGTCGACAATTATTCGACAAGG 75542 Query 427 AATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||||||| | ||| ||||| | |||||| || || ||||| Sbjct 75541 AATTTCGCTACCTTAGAACCCTTAGAGTTAGGGCTGCCGTTCACCGGTCCTTCA 75488 >seq72 Length=369545 Score = 82.4 bits (90), Expect = 3e-13 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 371 GAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 430 |||||||| | | || ||||||||||| ||| ||||| | ||| |||||||||||| Sbjct 13302 GAGACAGCGGATGGGTGATTACGCCATTCATGCGGGTCGACAATTATTCGACAAGGAATT 13361 Query 431 TCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCA 480 |||||||||||| | ||| ||||| | |||||| || || ||||| Sbjct 13362 TCGCTACCTTAGAACCCTTAGAGTTAGGGCTGCCGTTCACCGGTCCTTCA 13411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702376711168