Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq1022 149 1e-33 seq21 149 1e-33 >seq1022 Length=134933 Score = 149 bits (164), Expect = 1e-33 Identities = 206/288 (72%), Gaps = 19/288 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| || | Sbjct 131017 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTACCGTCA------------T 130970 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || |||| | | |||||| ||||||| || || |||||||| |||||| Sbjct 130969 TGA-----TTCTTCCTTAAGAAAAGAGGTTTACACACCAC-GATGCTTCATCCCTCACGC 130916 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 130915 GGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 130856 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 130855 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 130796 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || |||| ||| |||| || |||| ||||| ||||| Sbjct 130795 CGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCA 130748 >seq21 Length=95773 Score = 149 bits (164), Expect = 1e-33 Identities = 206/288 (72%), Gaps = 19/288 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| || | Sbjct 7960 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTACCGTCA------------T 8007 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || |||| | | |||||| ||||||| || || |||||||| |||||| Sbjct 8008 TGA-----TTCTTCCTTAAGAAAAGAGGTTTACACACCAC-GATGCTTCATCCCTCACGC 8061 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 8062 GGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 8121 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 8122 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 8181 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || |||| ||| |||| || |||| ||||| ||||| Sbjct 8182 CGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCA 8229 Score = 149 bits (164), Expect = 1e-33 Identities = 206/288 (72%), Gaps = 19/288 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||| ||||||||| | | |||| || | Sbjct 87893 GGCTGCTGGCACAGAGTTAGCCGGTGCTTATTCCTTAAGTACCGTCA------------T 87846 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 || || |||| | | |||||| ||||||| || || |||||||| |||||| Sbjct 87845 TGA-----TTCTTCCTTAAGAAAAGAGGTTTACACACCAC-GATGCTTCATCCCTCACGC 87792 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | ||| |||| || ||| |||||| || ||||| |||||||||||||||||| Sbjct 87791 GGTATTGCTCCATCAGGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 87732 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||| | ||| || Sbjct 87731 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 87672 Query 241 CGTAGGCTAGGTGGGCCGTTA-CCCCGCCTACTACCTAATGGAACGCA 287 ||| | || || |||| ||| |||| || |||| ||||| ||||| Sbjct 87671 CGTCGCCTTGGGAGGCCTTTACCCCCACCAACTAGCTAATCAGACGCA 87624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068785378816