Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1023 756 0.0 seq278 181 3e-43 seq1010 113 1e-22 seq996 113 1e-22 >seq1023 Length=7928 Score = 756 bits (838), Expect = 0.0 Identities = 476/507 (94%), Gaps = 5/507 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||| ||||||||| || ||||| ||| |||||||||||||||||| Sbjct 3922 GTACTCATTCCAATTATAAGACCCAATAGGGCCCTATATTGTTATTTATTGTCACTACCT 3863 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3862 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 3803 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3802 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 3743 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 3742 GGCCTCTATCCTACCATCGAAAGTTGATAGGGCAGATATTTGAATGAAGCATCGCCGGCA 3683 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| ||||||||||||||||||||| || ||||| | | ||||| Sbjct 3682 CAAGGCCATGCGATTCGAGAAGTTATTATGAATCACCAAGAAG-ACCGAA-GTCATTGGT 3625 Query 301 TTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGG-TTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| Sbjct 3624 TTTTTATCTAATAAATACACCCCTTCCAGAAGTCGGGGCTTTTCAGCATGTATTAGCTCT 3565 Query 359 AGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAAT 418 ||||||||||| ||||||||||||| ||| ||| ||||||||||| |||||||||||||| Sbjct 3564 AGAATTACCACAGTTATCCATGTAGCAAGATACCATCAAATAAACTATAACTGATTTAAT 3505 Query 419 GAGCCATTCGCAGTTTCACTGTATAGA-TTGCTTATACTTAGACATGCATGGCTTAATCT 477 ||||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||| Sbjct 3504 GAGCCATTCGCAGTTTCACGGTATAAATTTGTTTATACTTAGACATGCATGGCTTAATCT 3445 Query 478 TTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||| Sbjct 3444 TTGAGACAAGCATATGACTACTGGCAG 3418 >seq278 Length=147222 Score = 181 bits (200), Expect = 3e-43 Identities = 115/125 (92%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 380 GTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTG 439 |||||||||||| | ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 51871 GTAGTAAGGTACCACCAAATAAACTGTAACTGATTTAATGAGCCATTCGCAGTTTCACAG 51930 Query 440 TATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 |||| | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 51931 TATAAGCAGTTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 51990 Query 500 GGCAG 504 ||||| Sbjct 51991 GGCAG 51995 >seq1010 Length=4219 Score = 113 bits (124), Expect = 1e-22 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||| |||| |||||||||||||||||| Sbjct 91 GTACTCATTCCAATTACCAGACATAAAAT-GCCCGGTATTGTTATTTATTGTCACTACCT 33 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 |||||| || |||||||||||||||||||||| Sbjct 32 CCCCGTATCAGGATTGGGTAATTTGCGCGCCT 1 >seq996 Length=267772 Score = 113 bits (124), Expect = 1e-22 Identities = 81/92 (88%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| |||| |||| |||| |||||||||||||||||| Sbjct 91 GTACTCATTCCAATTACCAGACATAAAAT-GCCCGGTATTGTTATTTATTGTCACTACCT 33 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCT 92 |||||| || |||||||||||||||||||||| Sbjct 32 CCCCGTATCAGGATTGGGTAATTTGCGCGCCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510379337728