Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq723 131 1e-25 >seq723 Length=331235 Score = 131 bits (144), Expect = 1e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 ||||| ||| ||||||| || ||||| || || |||||| ||||||| || |||||| Sbjct 246413 ATCCACAGGCCGTAGAACAGGTCGCGGGCGCGCGCCTCCTCCTTGCCGTGGTTCTTGCGC 246354 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||| || ||||||| |||||||| ||||| || ||||||||||||||||||| |||| Sbjct 246353 ATGTCCAGCCACTCAAATATGTCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCGCCC 246294 Query 66476 ATACGTTTGCCGCCACCTTG 66495 | || |||||||| || || Sbjct 246293 TTGCGCTTGCCGCCGCCCTG 246274 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 65629 CCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGAGGAAACTATCGTACAC 65688 |||||| ||||| |||||| | ||| ||| |||| || || | | | |||||| Sbjct 247993 CCACATGTCCTGCTGCAGGATGCCGCGGCTGACCGGGGAGCCCTCGTACGTCTCGTACGT 247934 Query 65689 TCCCTCCTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAA 65748 |||||| ||||||| || ||||||||||| || || || | || |||||||| || Sbjct 247933 GCCCTCCACCTTGGCCAGCCTGCAGCTGGTCTCCAGCGCTGCGTAGTAGATGGTCTCAAA 247874 Query 65749 AATG-CGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAA 65807 ||| | | | | | | ||| ||| || ||||| || | ||||| || | ||| | | Sbjct 247873 GATGTCCTTGTTCAGCTGCAC-TGCATCGTCGCTGTCAAAGGGCATGCCGAGCAGCAGGA 247815 Query 65808 AAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACG 65865 | ||||| ||||| || || || || | |||||||| | || |||| ||||| || Sbjct 247814 AGGTGTCAGCCAGGCCCTGCACGCCCAGGCCGATGGGCCTGTGGCGCATGTTGGAGCG 247757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561371547520