Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq21 535 5e-147 >seq21 Length=95773 Score = 535 bits (592), Expect = 5e-147 Identities = 733/1021 (72%), Gaps = 10/1021 (1%) Strand=Plus/Plus Query 161512 TGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGGTCT 161571 ||||| |||| | ||| |||||| | | ||| |||||||| ||||| || ||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 161572 GGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACT 161631 || |||||||||||||| ||| || |||| | || |||||| ||||||| || ||| Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 161632 TTCGCTACGAGCTGGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGTGCAAATTTT 161691 || | || |||||||| ||||| | |||| ||| || | || ||| || || Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 161692 CTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTTCTC-TG 161750 | || || |||||| || || || || ||||| || || || || |||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 161751 GGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGAATTT 161810 |||||| || |||||||| ||||| | ||| ||| | || || | |||| || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 161811 TGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTTGC 161870 ||| || | || || |||| | | | |||||||||||| | ||||| |||||| |||| Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 161871 TCGTCTTATCGGTA----TCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTG 161926 ||| || ||| | ||||||||||||||||||||||| || | ||||||||||| Sbjct 40621 ACGT----TCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTG 40676 Query 161927 TTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGCGCCAT 161986 ||||||| || || | || || || | ||||| || |||||||| || || Sbjct 40677 TTTTTGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTA 40736 Query 161987 CGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAATTGGA 162046 ||||| ||||| ||||| ||| | || | | ||| | |||||||| || || |||| Sbjct 40737 GTTTTGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGA 40796 Query 162047 CGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCTCTCTG 162106 | | || || ||||| ||||||||||| || ||| | || |||| |||||| | | || Sbjct 40797 CATTAAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTG 40856 Query 162107 CTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAATACTT 162166 |||||||||||| |||||||||||||| | | |||||||||| ||||| || | Sbjct 40857 CTATTCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACAT 40916 Query 162167 TCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAACCGTT 162226 || || ||| || | || |||| || || |||||||| ||||| ||||||||||||| Sbjct 40917 TCCGTGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTT 40976 Query 162227 TCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTTTATGC 162286 |||||||||| || || ||| ||||||| || || |||||| | || ||||||||| Sbjct 40977 TCTGGTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGT 41036 Query 162287 TCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTTA 162346 | || ||||| || | || || |||| | | || ||| || |||| | ||||| | Sbjct 41037 TATTAGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAA 41096 Query 162347 ATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGAATTTG 162406 | | |||||||| ||||| ||||| || || |||||||| || || || || || || | Sbjct 41097 ACTTACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCG 41156 Query 162407 AAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGCACCAG 162466 |||| ||||| || || ||||| | || ||||||||| ||||||| ||| |||| | Sbjct 41157 AAACTTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTC 41216 Query 162467 TTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAACGCAC 162526 || ||||| || || || ||||||||||| ||||| | ||| | |||||||| | Sbjct 41217 AAGACCAACCACACGAACGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTC 41276 Query 162527 T 162527 | Sbjct 41277 T 41277 Score = 365 bits (404), Expect = 5e-96 Identities = 361/467 (77%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 160307 GTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGG 160366 || |||||||| ||||| || || |||||||| || ||||||||| | ||||| ||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 160367 GTATTCGGTGGATCTCTGTTCTCTGCTATGCATGGATCTCTGGTTACTTCTAGTCTCGTC 160426 ||||| ||||| || | |||||||||||||| || || | |||||||| | | || Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 160427 AGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAAGAGGAAGAG 160486 | || || || |||| || || ||| | || ||||| ||||||||||| ||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 160487 ACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCC 160546 |||||||||||||| || ||||| || ||||| |||||||| ||||||||||| || || Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 160547 TTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGG 160606 || |||||||| || || | ||||||||| | ||||||||||| ||||| || || ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 160607 TTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAG 160666 |||||||| | ||| |||| || ||||| ||||| || || ||||||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 160667 TCCATCTTGGACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCT 160726 || | | || ||||| | ||| | ||||| ||||| ||| | | ||||| ||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 160727 GGTCTGGGCATGGAAGTCATGCACGAGCGTAACGCTCACAACTTCCC 160773 | || |||||||| |||||||| |||||||||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 170 bits (188), Expect = 2e-37 Identities = 176/228 (77%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 ||||| |||||| | |||||||| | ||||| | || |||||||||| || || | Sbjct 13083 TTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTTTGGTGTGATC 13142 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | || | || ||| || | |||||| |||| |||||||||||||| Sbjct 13143 ATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCATCGCTGCTCC 13201 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || |||||||| |||||||| || || |||||||| | | ||||| ||||| Sbjct 13202 TCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTATACGGAAACAA 13261 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCA 160029 ||||||||||||||| || ||||| |||| ||||| || ||||| || Sbjct 13262 CATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 122 bits (134), Expect = 1e-22 Identities = 105/130 (81%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 160169 ATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGCTGTATTC 160228 |||||||| ||||| ||| || |||||||| ||||| || |||||| ||||||||||| Sbjct 16127 ATGCGTCCTTGGATTGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATTC 16186 Query 160229 CTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGT 160288 || ||||||| |||| || ||||||||||| || | ||||||| | ||||| || || Sbjct 16187 ATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGGA 16246 Query 160289 ACTTTTAACT 160298 ||||| |||| Sbjct 16247 ACTTTCAACT 16256 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160031 TTCTATCCCATTTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTC 160090 ||||| || ||||||||||| || || | || |||||| | || ||||||||||||| | Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 160091 CAACTCGTAGTCTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAA 160150 ||| | | || | |||||| | | || |||| || |||||||||||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 160151 CTCTCTTACCGTCTCGGTATGC 160172 | ||||||||| | ||||||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551366571470400