Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tetradesmus_20obliquus_20[genbank_20GCA_5F900108755.1_202016-11-05] 1,368 sequences; 107,715,903 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq21 576 2e-159 >seq21 Length=95773 Score = 576 bits (638), Expect = 2e-159 Identities = 744/1022 (73%), Gaps = 4/1022 (0%) Strand=Plus/Plus Query 163884 TGGTTCGATGTCCTGGACGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 163943 ||||| |||| | || |||||| | | ||| || || || ||||| |||||||| Sbjct 40262 TGGTTTGATGACGCTGATGACTGGTTACGTCAAGACCGTTTCGTATTTGTAGGTTGGTCA 40321 Query 163944 GGATTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGTACAACG 164003 || | ||||||||||| ||| || ||||| | || || ||| ||||||||||||| Sbjct 40322 GGTCTTCTTCTTTTTCCTTGTGCATACTTTGCACTAGGAGGTTGGTTTACTGGTACAACT 40381 Query 164004 TTTGTTACCAGTTGGTACACCCACGGTCTCGCGTCTAGTTACCTTGAGGGTGCTAATTTC 164063 ||||| || ||||| || || || | || || |||| | || ||| ||| ||| Sbjct 40382 TTTGTAACATCATGGTATACACATGGGTTAGCTACTTCTTACTTAGAAGGTTGTAACTTC 40441 Query 164064 CTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-TG 164122 | || || || || ||||| ||||| | ||||| || || || || | ||| || Sbjct 40442 TTAACTGCTGCAGTTTCAACACCTGCAAACAGTATGGCACACTCA-TTATTATTCTTATG 40500 Query 164123 GGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAACTTGGGGGACTCTGGGCTTT 164182 |||||| || |||| || || || | | | ||||| ||| | || || | ||| | || Sbjct 40501 GGGTCCAGAAGCTCAAGGTGATTTTACTCGTTGGTGTCAATTAGGTGGTTTATGGACATT 40560 Query 164183 TGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATGCTTCGGCAGTTTGAAATTGC 164242 ||| || || || || ||||| | | | || || |||||| | || || ||||||||||| Sbjct 40561 TGTTGCTTTACATGGTTCTTTTGGTTTAATTGGATTCATGTTACGTCAATTTGAAATTGC 40620 Query 164243 ACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTCTCTGGTCCGATTGCTGTCTT 164302 |||| ||| | ||||| |||||||||||||| || || | ||| |||||||| || Sbjct 40621 ACGTTCAGTAAACTTACGTCCTTACAATGCTATTGCTTTTTCAGCTCCTATTGCTGTTTT 40680 Query 164303 TGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGTTGGTTCTTTGCCCCCTCGTT 164362 ||| || ||| | || ||||| | || ||||| ||||||||||||| || || Sbjct 40681 TGTTTCAGTATTCTTAATTTACCCATTAGGACAATCAGGTTGGTTCTTTGCACCTAGTTT 40740 Query 164363 TGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAAGGTTTCCATAACTGGACACT 164422 ||| || || || |||||| | || | |||||| |||||||||| |||||||||||| | Sbjct 40741 TGGTGTTGCTGCTATCTTCCGTTTTATTTTGTTCTTCCAAGGTTTTCATAACTGGACATT 40800 Query 164423 CAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGTGGTGCTCTTCTCTGTGCTAT 164482 ||||| |||||||||||||||||||| || | | |||| |||| | | |||||||| Sbjct 40801 AAACCCATTCCATATGATGGGTGTTGCTGGTGTTTTAGGTGCTGCTTTATTATGTGCTAT 40860 Query 164483 TCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGTGAACAATCAAATACTTTCAA 164542 ||| |||||||| || || || || || |||||||||||||| |||| || ||| Sbjct 40861 TCACGGTGCTACTGTTGAAAACACATTATTTGAAGATGGTGATGGTGCAAACACATTCCG 40920 Query 164543 GGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTG 164602 ||||| | || ||||||| ||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 40921 TGCATTTAACCCAACTCAAGCTGAAGAAACTTACTCTATGGTAACTGCGAACCGTTTCTG 40980 Query 164603 GTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTT 164662 ||| || ||||||||| |||||||| || || |||||| | |||||||||||| | || Sbjct 40981 GTCACAAATTTTTGGTGTTGCTTTCTCAAACAAACGTTGGCTTCACTTCTTTATGTTATT 41040 Query 164663 TGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTCAATCT 164722 ||||| || | ||||| |||| | | |||||| | | ||| | || || || | Sbjct 41041 AGTTCCGGTAACAGGACTATGGATGTCTGCGATTGGTGTTGTTGGTTTAGCTCTAAACTT 41100 Query 164723 TCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTGAGAC 164782 ||||||||||| || || || || || ||| | || || || || || || || || || Sbjct 41101 ACGTGCTTATGACTTCGTATCACAAGAAATTCGTGCTGCTGAAGACCCAGAGTTCGAAAC 41160 Query 164783 GTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAGTAGA 164842 |||||||| || || || | | |||||||| | ||||| ||||||||| | ||| Sbjct 41161 TTTCTATACTAAAAATATTTTATTAAATGAAGGTATTCGTGCTTGGATGGCTGCTCAAGA 41220 Query 164843 CCAGCCACACGAATCGTTT-GTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCACTCT 164901 ||| ||||||||| ||||| ||||| || || ||||| | || | |||||||| || | Sbjct 41221 CCAACCACACGAA-CGTTTAGTATTCCCTGAAGAAGTATTACCTCGTGGTAACGCTCTAT 41279 Query 164902 AA 164903 || Sbjct 41280 AA 41281 Score = 410 bits (454), Expect = 1e-109 Identities = 371/467 (79%), Gaps = 0/467 (0%) Strand=Plus/Plus Query 161076 GTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || ||||| || ||||| ||||| || |||||||| ||||||||||| ||||| |||||| Sbjct 17374 GTTTTCCAAGCTGAACATAACATTCTTATGCACCCTTTCCACATGTTAGGTGTAGCTGGT 17433 Query 161136 GTCTTCGGTGGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTT 161195 || || |||||||| | ||||| || ||||| |||||| | |||||||| || | | Sbjct 17434 GTATTTGGTGGTTCATTATTCTCTGCTATGCACGGTTCATTAGTTACTTCATCTTTAATC 17493 Query 161196 CGTGAAACCACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAG 161255 |||||||| ||||| ||||| || ||| | || ||||| || |||||||||||||| Sbjct 17494 CGTGAAACAACTGAAAACGAATCTGCTAACGAAGGATACAAATTCGGTCAAGAAGAAGAA 17553 Query 161256 ACCTACAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCC 161315 || ||||||||||| || || || |||||||| ||||| | ||||||||||||||||| Sbjct 17554 ACTTACAACATCGTAGCCGCACACGGTTACTTTGGTCGTTTAATCTTCCAATACGCTTCT 17613 Query 161316 TTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGG 161375 ||||||||||| ||||| || ||||||||| | || || ||||| ||||| ||||| ||| Sbjct 17614 TTCAACAACTCTCGTTCATTACACTTCTTCTTAGCTGCTTGGCCAGTTGTAGGTATTTGG 17673 Query 161376 TTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAG 161435 |||||||| | ||| | || || ||||| |||||||| ||||| |||||||||||||| Sbjct 17674 TTCACTGCTTTAGGTATTTCAACTATGGCTTTCAACCTTAACGGTTTCAACTTCAACCAA 17733 Query 161436 TCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCT 161495 || | | ||| || || || | ||||| ||||||||| | | || |||||| Sbjct 17734 TCAGTTGTTGATTCACAAGGTCGTGTTTTAAACACATGGGCTGACATCATCAACCGTGCT 17793 Query 161496 AACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCC 161542 ||| | ||||||||||| |||||||| ||||| |||||||||||||| Sbjct 17794 AACTTAGGTATGGAAGTTATGCACGAACGTAACGCTCACAACTTCCC 17840 Score = 170 bits (188), Expect = 2e-37 Identities = 182/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 160562 TTGGGAACAATTCTGCGAGTGGGTAACTTCTACAAACAATCGTCTTTACGTCGGTTGGTT 160621 ||||| || ||||| |||||| | |||||||| | || ||| | ||| |||||||||| Sbjct 13073 TTGGGCACGTTTCTGTGAGTGGATCACTTCTACTGAAAACCGTTTATACATCGGTTGGTT 13132 Query 160622 CGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGCTTT-ATTACTGCGTTCG 160680 |||||| | |||||||| || | || | || || || | || || | || ||| Sbjct 13133 TGGTGTGATCATGATCCCTACATTATTAACTGCTACT-TCAGTATTCATCATCGCTTTCA 13191 Query 160681 TTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGT 160740 | |||||||| || || || ||||| ||||||||||| || ||| |||||||| | | | Sbjct 13192 TCGCTGCTCCTCCAGTAGATATCGATGGTATCCGTGAGCCAGTTTCTGGTTCATTATTAT 13251 Query 160741 ATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCA 160798 | ||||||||||||||||||||||| || |||||| |||| ||||| || ||||| || Sbjct 13252 ACGGAAACAACATCATCTCTGGTGCTGTAGTTCCTACTTCAAACGCTATCGGTCTGCA 13309 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 160800 TTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTAC 160859 |||||||| |||||||||||||| ||| | ||||| ||| | ||||| |||||||||||| Sbjct 14674 TTCTACCCAATTTGGGAAGCTGCTTCTTTAGATGAGTGGTTATACAACGGTGGTCCTTAC 14733 Query 160860 CAACTGGTCGTATTTCACTTCCTGATCGGCATCTTCTGCTACATGGGTCGCGAGTGGGAA 160919 ||| | |||| | ||||||| | | || |||| ||| ||||||||||| ||||||||| Sbjct 14734 CAATTAATCGTTTGTCACTTCTTCTTAGGTATCTGCTGTTACATGGGTCGTGAGTGGGAA 14793 Query 160920 CTTTCCTACCGCCTCGGCATGC 160941 | || ||||| | || |||| Sbjct 14794 TTATCTTACCGTTTAGGTATGC 14815 Score = 125 bits (138), Expect = 8e-24 Identities = 111/136 (82%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 160938 ATGCGCCCCTGGATCTGC-GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATT 160996 ||||| || ||||| ||| || || || |||||||| ||||| ||||| | ||| ||||| Sbjct 16127 ATGCGTCCTTGGAT-TGCTGTAGCTTACTCTGCACCAGTTGCAGCTGCTACTGCTGTATT 16185 Query 160997 CCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGG 161056 | || |||| ||| |||| ||||||||||||||||| |||||||| | ||||| || || Sbjct 16186 CATCATCTACCCTATCGGACAAGGTTCTTTCTCTGACGGTATGCCTTTAGGTATTTCAGG 16245 Query 161057 TACCTTCAACTTCATG 161072 || |||||||||||| Sbjct 16246 AACTTTCAACTTCATG 16261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559318435491200