Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq7 131 5e-28 seq846 125 2e-26 seq167 125 2e-26 seq82 82.4 2e-13 >seq7 Length=102955 Score = 131 bits (144), Expect = 5e-28 Identities = 84/92 (91%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 442 AGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCA 501 |||| ||||||||||||| ||||||||||||||| |||| ||||||||||||||||||| Sbjct 43899 AGTCGAAGTTACTCCCGCCATTTACCCGCGCTTGGGTGAACTTCTTCACTTTGACATTCA 43840 Query 502 GAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||| |||||| | ||||| Sbjct 43839 GAGCACTGGGCAGAAATTACATTGTGGCAACA 43808 >seq846 Length=7821234 Score = 125 bits (138), Expect = 2e-26 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||| ||||||||||||||| ||||||||||||||| | | |||||||| || Sbjct 2426672 GCTGTGGTTCTGCTAGATAGTAGATATGGACAGTGGGAATCTTGGCAGCCCATTCATACG 2426731 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 | ||||||| ||||||||||||||||||||||||||| Sbjct 2426732 CATCACTAACTAGATGACGAGGCATTTGGCTACCTTA 2426768 >seq167 Length=33299 Score = 125 bits (138), Expect = 2e-26 Identities = 86/97 (89%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 341 GCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCG 400 ||||||||| ||||||||||||||| ||||||||||||||| | | |||||||| || Sbjct 19323 GCTGTGGTTCTGCTAGATAGTAGATATGGACAGTGGGAATCTTGGCAGCCCATTCATACG 19264 Query 401 CGTCACTAATTAGATGACGAGGCATTTGGCTACCTTA 437 | ||||||| ||||||||||||||||||||||||||| Sbjct 19263 CATCACTAACTAGATGACGAGGCATTTGGCTACCTTA 19227 >seq82 Length=1542430 Score = 82.4 bits (90), Expect = 2e-13 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 ||||| |||| ||||| |||||||||||||||||||||||||||||| |||||| | || Sbjct 940463 GCTTGATTGAGTTTCTGTACTTTGACATTCAGAGCACTGGGCAGAAATTACATTGTGGCA 940404 Query 531 ACA 533 ||| Sbjct 940403 ACA 940401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635186133504