Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20gelatinosa_20[genbank_20GCA_5F000818905.1_202015-01-16] 848 sequences; 61,726,235 total letters Query= NC_032108.1 Length=589068 Score E Sequences producing significant alignments: (Bits) Value seq838 89.7 2e-12 seq828 89.7 2e-12 >seq838 Length=3057357 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Plus Query 364419 GCTTACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCA 364478 ||| |||||| ||||| ||||| ||||||| | | ||||||||||||| ||||| || | Sbjct 1303112 GCTCACCAATGGTCATGCGAGACGGAATGGCGTGGGGGTTGATGATGAGATCAGGGACAA 1303171 Query 364479 TGCCGTCAGCGGTAAAGGGCATATCTTC--GGGAGGAACGATGAGACCAATGGTTCCCTT 364536 |||| || || | ||||| ||||| ||| | | | ||| |||||||| ||||| Sbjct 1303172 TGCCATCCTGTGTCCAAGGCATGTCTTCCTGGGTGTA--GGTGATGCCAATGGTGCCCTT 1303229 Query 364537 TTGCGCATAGCGAGAAGCAAACTTGTCGCC 364566 ||| ||| | | ||||||||||| || Sbjct 1303230 CTGCCCATGCCTACTGGCAAACTTGTCTCC 1303259 >seq828 Length=1807457 Score = 89.7 bits (98), Expect = 2e-12 Identities = 111/150 (74%), Gaps = 4/150 (3%) Strand=Plus/Minus Query 364419 GCTTACCAATAGTCATACGAGAGGGAATGGAGAGAGGGTTGATGATGATGTCAGGCACCA 364478 ||| |||||| ||||| ||||| ||||||| | | ||||||||||||| ||||| || | Sbjct 1805782 GCTCACCAATGGTCATGCGAGACGGAATGGCGTGGGGGTTGATGATGAGATCAGGGACAA 1805723 Query 364479 TGCCGTCAGCGGTAAAGGGCATATCTTC--GGGAGGAACGATGAGACCAATGGTTCCCTT 364536 |||| || || | ||||| ||||| ||| | | | ||| |||||||| ||||| Sbjct 1805722 TGCCATCCTGTGTCCAAGGCATGTCTTCCTGGGTGTA--GGTGATGCCAATGGTGCCCTT 1805665 Query 364537 TTGCGCATAGCGAGAAGCAAACTTGTCGCC 364566 ||| ||| | | ||||||||||| || Sbjct 1805664 CTGCCCATGCCTACTGGCAAACTTGTCTCC 1805635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1884865920709264