Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq42 235 1e-59 seq142 95.1 3e-17 >seq42 Length=3281 Score = 235 bits (260), Expect = 1e-59 Identities = 253/335 (76%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||||||||||||| ||||||||| |||||||||||||||||||||||| || ||| Sbjct 1172 TATCTGAAGAATAAGCATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGATGC 1231 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | ||||||||||| || | ||| || || | ||| | ||| Sbjct 1232 AAGCGTTATCCGGAATGATTGGGCGTAAAGGGTCTGTAGGTGGGTGAGAAAGTCTTCTGT 1291 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| || |||||||||| | | ||| | | ||| | | ||||||| | || Sbjct 1292 TAAAAACCTGGGCTTAACCCAGTCAGAGCAGTAGAAACTTCTCACCTAGAGTACGGTAGG 1351 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||| ||| ||||||| ||||||||||| ||||| ||| ||||||| |||| Sbjct 1352 GGCAGAGGGAACTCCCGGTGTAGCGGTGAAATGCGTTGATATCGGGAAGAACACCGATGG 1411 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| || | ||||| | |||||| || | | |||||||| ||||||| || | Sbjct 1412 CGAAAGCGCTCTGCTGGGCCGAAACTGACACTGAGGGACGAAAGCTAGGGGAGCGAAAGG 1471 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||| ||||||| ||| |||||||| Sbjct 1472 GATTAGATACCCCTGTAGTCCTAGCCGTAAACGAT 1506 >seq142 Length=60166 Score = 95.1 bits (104), Expect = 3e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20 CCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATT 79 ||||| |||| |||||||||||||||||||||||| ||| || ||||||| ||| ||| Sbjct 16420 CCGGCCAACTCCGTGCCAGCAGCCGCGGTAATACGGGGGGGGCGAGCGTTATTCGAAATG 16479 Query 80 ACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAG 114 | ||||||||||| | || || ||||| | |||| Sbjct 16480 ATTGGGCGTAAAGAGCACGTAGACGGTTTTTTAAG 16514 Score = 75.2 bits (82), Expect = 3e-11 Identities = 119/171 (70%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 167 ACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGT 226 |||||||| | ||||| |||||||||| | | | || |||| ||||| Sbjct 16618 ACTAGAGTAAATTAGAGGAAAGTGGAATTCCTGGAGGAAAGGTTAAATTTTATGATATCA 16677 Query 227 GGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAG 286 |||||||| |||| ||| ||||| | || | ||||||| | | | |||||| Sbjct 16678 GGAGGAACGCCAAGAGCGTAGGCAACTTTCTACTGTTTTACTGACGTTGAGGTGCGAAAG 16737 Query 287 CGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 | |||||| |||| ||||||||||||| |||||||| ||| | ||| || Sbjct 16738 CATGGGGATCAAAGGGGATTAGATACCCCTGTAGTCCATGCCGTCAACTAT 16788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289591269408