Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq96 138 2e-30 seq142 125 1e-26 >seq96 Length=18243 Score = 138 bits (152), Expect = 2e-30 Identities = 180/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 10236 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC-GACTTAGCGGAGACC 10294 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| | || || ||||| || | | ||| | Sbjct 10295 TGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCCCTCTTCTTA-CAATAAA 10353 Query 126 TCGT---TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATT 182 | | | | | | ||| ||||||||||||||||||||||||||||||||||| || Sbjct 10354 TAATATATAATAATAAAGGGCGCCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAGTT 10413 Query 183 CCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 ||||| | |||| | || | |||| |||| |||||||| | |||||||||||||| Sbjct 10414 CCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACCTACCTACCTGTGTCGGTTT 10473 Query 243 ACGGTA 248 |||| Sbjct 10474 CGGGTA 10479 >seq142 Length=60166 Score = 125 bits (138), Expect = 1e-26 Identities = 154/206 (75%), Gaps = 17/206 (8%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||||||||| || ||||| | | ||||| ||| ||| | |||| Sbjct 10971 TTCCAGCACCGGGCAGGCGTCAGACCCTATACTTAGTGTTACCA-CTTTGCAGAGTCCTG 10913 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||||||||||||||| ||| ||||||| || ||||| ||||| | | Sbjct 10912 TGTTTTTAGTAAACAGTCGCCACCCCCTATTCTGTG------CCACCCTCTCAATA--TA 10861 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 | || || || | |||| |||||||||||||| | ||||||||||| |||||| Sbjct 10860 G------AG-AG-GGTCCTCCTTTTCCCGAAGTTACGGAGGCATTTTGCCGAGTTCCTTC 10809 Query 188 ACCACAGTTCACCCGAACGCCTTAGT 213 | || ||| | | ||||||||||| Sbjct 10808 AACATGGTTTTCTCAAACGCCTTAGT 10783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694395445821