Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq96 251 2e-64 seq142 105 2e-20 >seq96 Length=18243 Score = 251 bits (278), Expect = 2e-64 Identities = 308/420 (73%), Gaps = 18/420 (4%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||||||| |||||| Sbjct 10040 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGTT 10099 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || |||||||| ||| ||||||||| |||||||||||||||||||||||||| || | Sbjct 10100 ACACCTTTCGTGCACGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACTGTCA 10159 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----------GTTAGC 182 | ||||| ||||||||| |||||||||||| | |||||| | | || Sbjct 10160 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTTGTAAGCTTCCCTATCCCGTAGGATAAG 10219 Query 183 TAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC 242 |||| | || |||||||||||| |||||||||||| ||| |||| | ||| | Sbjct 10220 TAACAAACTTCTTTTACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC 10279 Query 243 GTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGG 302 | || || ||| |||||||||| ||||||||||| |||||||| || || || Sbjct 10280 GACTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCCCT 10339 Query 303 CATGAGCTTACGGAGCAAGTCCT---TCACCCTCACCGGCGCACCTTCTCCCGAAGTTAC 359 | | ||||| | || | | | | | | ||||| ||||||||||||||||| Sbjct 10340 CTT---CTTAC--AATAAATAATATATAATAATAAAGGGCGCCCCTTCTCCCGAAGTTAC 10394 Query 360 GGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 || ||| ||||||| |||||||| ||||| |||| || ||||||||| ||||||| Sbjct 10395 GGGGCCATTTTGCCGAGTTCCTTAGAGAGAGTTATCTCGCGCCCCTTGGTATACTCTACC 10454 >seq142 Length=60166 Score = 105 bits (116), Expect = 2e-20 Identities = 97/123 (79%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 3 CGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGC 62 ||| ||| | |||||||||| | || ||||||||||||||||| | ||||||||| | Sbjct 13019 CGGGTACTCCGCATCTTCACGGAGAATTCAATTTCACTGAGTCCATGTTGGAGACAGTGG 12960 Query 63 CGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTT 122 || |||| ||||||||| |||||| | | ||| | ||||||||||||||||||| Sbjct 12959 GGCAGTCGTGACGCCATTCATGCAGGGCACTAATTAGGTGTCAAGGAATTTCGCTACCTT 12900 Query 123 AGG 125 ||| Sbjct 12899 AGG 12897 Score = 98.7 bits (108), Expect = 3e-18 Identities = 187/276 (68%), Gaps = 21/276 (8%) Strand=Plus/Minus Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC-GCGTTAGCTAACCCCATCA 193 |||||||||||||||||| ||| ||| | | |||| | | || ||| | | Sbjct 11038 GTTACGGCCGCCGTTTACTGGGCCTTTGGTTTGAAGCTCAAGAAATCTCTCACCTCTCCC 10979 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 |||| |||| ||||||||||||||||| ||||||||| | || | |||||||| Sbjct 10978 CTTAAGTTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTAGTGTTACCACTTTGCAGA 10919 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 313 || ||||||||||| ||||||||||| | ||| | | | | ||| | | | || Sbjct 10918 GTCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTATTCTGTGCCACCCTC-TCA--ATAT 10862 Query 314 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCC 373 ||| ||||| |||| |||||||||||||| | | ||||||| Sbjct 10861 AGAGAGGGTCCT-----------------CCTTTTCCCGAAGTTACGGAGGCATTTTGCC 10819 Query 374 TAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGT 409 ||||||||| | ||| |||||| |||||| || Sbjct 10818 GAGTTCCTTCAACATGGTTTTCTCAAACGCCTTAGT 10783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260791464384