Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq96 277 4e-72 seq142 176 1e-41 >seq96 Length=18243 Score = 277 bits (306), Expect = 4e-72 Identities = 285/379 (75%), Gaps = 33/379 (9%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||||| || | ||||||| ||||| |||||| Sbjct 10040 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGCGCCCAGATCGTT 10099 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || |||||||||| ||| ||||||||| |||||||||||||||||||||||||| || | Sbjct 10100 ACACCTTTCGTGCACGTCAGAACTTACCTGACAAGGAATTTCGCTACCTTAGGACTGTCA 10159 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTC---------- 176 ||||||| ||||||||| || ||||||| ||| ||||| | | | Sbjct 10160 TAGTTACAGCCGCCGTTCACCGGGGCTTCGGTTGTAAGCTTCCCTATCCCGTAGGATAAG 10219 Query 177 TAACAGATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGC 236 ||||| | | || ||||||| |||| |||||||||||||| || |||||| ||||| | Sbjct 10220 TAACAAACTTCTTTTACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATTGTCTTAC 10279 Query 237 GACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCC-- 294 |||||||| || ||||||||||||||||||||||||| ||||||| || |||||||| Sbjct 10280 GACTTAGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCTGGGCCTGGTCACTGCGGCCCT 10339 Query 295 -------------------TGTCATA--GACAGGCACCCCTTCTCCCTAAGTTACGGGGT 333 | | ||| | ||| ||||||||||| ||||||||||| Sbjct 10340 CTTCTTACAATAAATAATATATAATAATAAAGGGCGCCCCTTCTCCCGAAGTTACGGGGC 10399 Query 334 CATTTTGCCGAGTTCCTTA 352 ||||||||||||||||||| Sbjct 10400 CATTTTGCCGAGTTCCTTA 10418 >seq142 Length=60166 Score = 176 bits (194), Expect = 1e-41 Identities = 186/239 (78%), Gaps = 7/239 (3%) Strand=Plus/Minus Query 124 TTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTC-GATTGCTCTAACAG 182 ||| ||||||||||||||||||||||| ||| ||| ||| || |||| || Sbjct 11043 TTAGAGTTACGGCCGCCGTTTACTGGGCCTTTGGTTTGAAGCTCAAGAAATCTCTCACCT 10984 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 ||||||||| ||||||||||||||||||||||| ||||||| | || || | |||| Sbjct 10983 CTCCCCTTAAGTTTCCAGCACCGGGCAGGCGTCAGACCCTATACTTAGTGTTACCACTTT 10924 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTG-CGGCCTGTC--- 298 ||||| ||||||||||| |||||||||||| |||||||| || | ||| || Sbjct 10923 GCAGAGTCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTATTCTGTGCCACCCTCTCAAT 10864 Query 299 ATAGACAGGCACC-CCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT-AACA 355 ||||| ||| || |||| |||| ||||||||| | |||||||||||||||||| |||| Sbjct 10863 ATAGAGAGGGTCCTCCTTTTCCCGAAGTTACGGAGGCATTTTGCCGAGTTCCTTCAACA 10805 Score = 84.2 bits (92), Expect = 5e-14 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| ||||| || | ||||||||| | Sbjct 13015 TACTCCGCATCTTCACGGAGAATTCAATTTCACTGAGTCCATGTTGGAGACAGTGGGGCA 12956 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGG 119 |||| ||||| ||| ||| || | | ||| | |||||||||||||||||||||| Sbjct 12955 GTCGTGACGCCATTCATGCAGGGCACTAATTAGGTGTCAAGGAATTTCGCTACCTTAGG 12897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062392807552