Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq42 289 9e-76 seq142 167 7e-39 >seq42 Length=3281 Score = 289 bits (320), Expect = 9e-76 Identities = 282/358 (79%), Gaps = 15/358 (4%) Strand=Plus/Plus Query 153 GTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC 212 || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 2087 GTAACAGGTGGTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGC 2146 Query 213 AACGAGCGCAACCCTTAAGCTTAGTT----GC-CATCATTAA-------GTTGGGCACTC 260 |||||||||||||||| |||||| || || || || |||| ||| Sbjct 2147 AACGAGCGCAACCCTTGTTGTTAGTTAATTGCTCAACAACAACCCTGTTGTTGAGCAAAA 2206 Query 261 -TAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCC 319 ||| |||||| ||||| || | ||||||||||| |||||||||||| |||||||||| Sbjct 2207 GTAACAAGACTGCTGGTGA-AAGCTGGAGGAAGGTGAGGACGACGTCAAGTCATCATGCC 2265 Query 320 CCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCG 379 ||||||| |||||||||||||||||||||||| | |||| ||| || || |||| Sbjct 2266 CCTTATGCCCTGGGCTACACACGTGCTACAATGGCCGGGACAATGGGTTGCAAACTCGCG 2325 Query 380 AGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTAT 439 ||| || |||| || ||| | ||||||||||||||| || |||||||||| || Sbjct 2326 AGGGGGTGCCAATCTCAAAAACCCGGTCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGC 2385 Query 440 ATGAAGCTGGAATCGCTAGTAATCGTAGATCAGC-ATGCTACGGTGAATACGTTCCCG 496 |||||| ||||||||||||||||| | ||||| | | |||||||||||||| || Sbjct 2386 ATGAAGTCGGAATCGCTAGTAATCGCCGGTCAGCTACACGGCGGTGAATACGTTCTCG 2443 Score = 149 bits (164), Expect = 2e-33 Identities = 93/100 (93%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1807 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 1866 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACA 106 |||||||| ||||||||||||||||||||| ||||||| Sbjct 1867 TAATTCGATGCAACGCGAAGAACCTTACCAGGGCTTGACA 1906 >seq142 Length=60166 Score = 167 bits (184), Expect = 7e-39 Identities = 221/306 (72%), Gaps = 12/306 (4%) Strand=Plus/Plus Query 191 GAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAG 250 |||||||| |||||||||| |||||||||||||||| | |||| | || ||| Sbjct 17643 GAGATGTTTGGTTAAGTCCTTTAACGAGCGCAACCCTTTTGAAATGTTGGTA--ATAAAG 17700 Query 251 ---------TTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACG 301 || |||||| ||||||||| | | || ||||||||| ||| Sbjct 17701 AATCAATTTTTAACCACTCTTTTCATACTGCCGGTTATATACTGGAGGAAGGGAAGGATA 17760 Query 302 ACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACA 361 ||||||| || ||||| |||||||| ||||||||||||||| |||||||| |||| Sbjct 17761 ACGTCAAGTCGTCATGACCCTTATGGGCTGGGCTACACACGTGTTACAATGGTGGTTACA 17820 Query 362 AAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGT 421 ||||| ||| | |||| ||| ||||| ||| | |||||||| |||||| Sbjct 17821 AAGGGAAGCAATGATGCGAATCGGAGCGAATCCTTAAAAACTAC-CTCAGTTCAGATTGT 17879 Query 422 AGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACG 481 ||||||| |||| | |||||| ||||||| ||||||||||| |||||||| || ||| Sbjct 17880 TCTCTGCAATTCGAGAACATGAAGATGGAATCACTAGTAATCGTGGATCAGCACGCCACG 17939 Query 482 GTGAAT 487 |||||| Sbjct 17940 GTGAAT 17945 Score = 132 bits (146), Expect = 1e-28 Identities = 146/193 (76%), Gaps = 11/193 (6%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||||||| |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 16873 TACGGCCGCAAGGTTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 16932 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| |||||||| | Sbjct 16933 GTGGTTTAATTCGACACAACGCGCAAAACCTTACCAGCCCTTGACAT---------AAGC 16983 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAG-TGACAGGTGATGCATGGTTGTCGTCA 179 | || ||| | ||| | ||| | | || | ||||| | ||||||| |||||||| Sbjct 16984 TTGA-ATACATCTTTTACTGGATGGGCATACAGCTTACAGGCGTTGCATGGCTGTCGTCA 17042 Query 180 GCTCGTGTCGTGA 192 ||||||||||||| Sbjct 17043 GCTCGTGTCGTGA 17055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503989817920