Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trebouxia_20sp._20TZW2008_20[genbank_20GCA_5F002118135.1_202017-03- 31] 677 sequences; 69,346,529 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq96 206 5e-51 seq142 127 4e-27 seq63 98.7 2e-18 >seq96 Length=18243 Score = 206 bits (228), Expect = 5e-51 Identities = 182/227 (80%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| ||||||||||||||||||||||| |||| ||| ||||||||| | Sbjct 9851 GACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCGTCTCCTAAAAGGTAACGGAGATGT 9792 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| |||| ||||| || | |||| ||||||| ||||| | | Sbjct 9791 GCAAAGGTTCCCTCAGGCTGGACGGAAATCAGCTAAAGAGTGTAAAGGCATAAGGGAGCT 9732 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| |||| | Sbjct 9731 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTAC 9672 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 9671 CGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 9625 >seq142 Length=60166 Score = 127 bits (140), Expect = 4e-27 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| |||||||||||||||||| ||| ||||||||||||| | | ||| || || Sbjct 13180 GGGTAGTTTGACTGGGGCGGTCATTTCCTAAAGAGTAACGGAAATGTGCGAAGGTAAGCT 13239 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 |||| ||| |||||||| | | || |||| || | ||| || |||||| || || Sbjct 13240 CAGCCTGGTCGGAAACCAGGTAGAGAGCGCAATGGTACAAGCTTGCCTGACTGTGAGACT 13299 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 |||||| | |||||||||||||||| | || ||| |||| | | | ||||| ||| Sbjct 13300 TACAAGTCGAACAGGGACGAAAGTCGGCCATAGTGACCCGGGAGCACCGTGTGGAAGGGC 13359 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 ||| || |||||| |||| ||| || ||||| Sbjct 13360 TCTCGATCAACGGATCAAAGGTACGCTAGGGAT 13392 >seq63 Length=728494 Score = 98.7 bits (108), Expect = 2e-18 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 126 GGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCT 185 ||| || ||||||||||||||| | | ||||||||||||| || | ||| || || Sbjct 82706 GGGTAGCTTGACTGGGGCGGTCATTTACTAAAGAGTAACGGAAACGTGCGAAGGTAAGCT 82765 Query 186 CAGCTTGGATGGAAACCATGCGCACAGTGCAAA--GGCAAAAGGGTGTTTGACTGCGACA 243 |||| ||| |||||||| | | || ||||| || | ||| || |||||| || | Sbjct 82766 CAGCCTGGTCGGAAACCA--GGTAGAGAGCAAAATGGTACAAGCTTGCCTGACTGTGAGA 82823 Query 244 CCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACG 303 | |||||| | ||||||||||||| || | | ||| ||| | | | ||||| | Sbjct 82824 CTTACAAGTCAAACAGGGACGAAAGTGGGCCATTGTGACTCGGGAGCACCGTGTGGAAGG 82883 Query 304 GCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 || || || |||||| |||| ||| || ||||| Sbjct 82884 GCTCTCAATCAACGGATCAAAGGTACGCTAGGGAT 82918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982393349152